Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1528 ATGGATGATGATCAAGATCATCACATGGCATCCACGTTGGATCTTAATCTTAAACTTGGATTAGGAAGTTATGTGCAAAACAATGTGAACAAACCACTGGTTGATTCAAAAGAAGAATTGGCCATTGATTTGAACCATGATAGGGCAAATGAATTGAGTTTGAAAAGAGTGCATGAAGAACAAGCAAACACTGTTGAAGAAGAAATTGCTATTGACACCACCAATGATAACAACGGGTGCCCAAAGAAATTGAGGCTTACAACTGAGCAATCAAACAAGCTTGAAAATGCCTTCAAGCGTCACAACACAATTAACACCGCTCAAAAACGGGCACTTGCTGAGGAATTGAATTTAAAGCAAAGACAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAACAAACAGAGGTGAACTGTATATACTTGAGAAAATGTCATGAGAAACTAAGTGAAGAGAATCTTAGGTTGAAGAAGGAATTAGAAGAACTGCGTGCATTAAAAGTTGGACCATCAAATACAACTCAATCATCTAAAGCTGCAAATTGGACCATTTGTTCATCATGCAAGAAAATATGGAAACCCAATGAGGAAGATGTTGTTATTAAGAGCAGCCACAGCACCATAGAGTTAGATTAA 648 0.3781 MDDDQDHHMASTLDLNLKLGLGSYVQNNVNKPLVDSKEELAIDLNHDRANELSLKRVHEEQANTVEEEIAIDTTNDNNGCPKKLRLTTEQSNKLENAFKRHNTINTAQKRALAEELNLKQRQVEVWFQNRRARTKLKQTEVNCIYLRKCHEKLSEENLRLKKELEELRALKVGPSNTTQSSKAANWTICSSCKKIWKPNEEDVVIKSSHSTIELD* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1528 215 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Mtr2g1528 215 CDD homeodomain 82 138 IPR001356 GO:0003677
Mtr2g1528 215 Pfam Homeodomain 83 135 IPR001356 GO:0003677
Mtr2g1528 215 Coils Coil 150 170 - -
Mtr2g1528 215 SMART halz 137 180 IPR003106 GO:0006355|GO:0043565
Mtr2g1528 215 SUPERFAMILY Homeodomain-like 75 138 IPR009057 -
Mtr2g1528 215 SMART HOX_1 79 141 IPR001356 GO:0003677
Mtr2g1528 215 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 16 201 - -
Mtr2g1528 215 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Mtr2g1528 215 Gene3D - 62 142 - -
Mtr2g1528 215 PANTHER - 16 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1528 Mtr-Chr2 16939988 16941873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1528 51 199 Homeobox Transcription Factor Family AT4G17460 51.007 4.39e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mtr2g1528 Homeodomain 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1528 K09338 - gmx:100790522 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4676 4 60766916 60768504 Mtr2g1528 2 16939988 16941873 PCT