Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1523 ATGGAGCCTGTTGATGCAGCAAAAGATGTTGGCAAGAATAGCTCCATTTCTGTGATGATTTCAAACCCTAAAGTGTTCGACTGCAGCATTTGTTTTCAACTCTTAAGCTTTCCAATCTTTCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTGCTCTAAGTTTGGGAACAAGTGTGACAAGTGCTCAAAATGCATTAGCTTAAAACGTTGTAGAGCCTTTGAGAATCTATTGCAATATATCAAAATGCCATGTCTGAATGAAAAATATGGTTGCAAGGAGACAATCGATTACATTCAGAAGAGGAAGCATGAAGAAGAATGCATCTATGTGCCATGTTATTGCCCCCTTTCAGGTTGTGACTTTGTTGCTTCATCAGAGGTGTTGTCCGACCATTTCAGCCATAAACACGAGGATTCTCAAATCAATTTTTATTATGGATTTTCTTTTCTTGTCTCCTTGAAGTCTGATGATGAAGTCATTGTTCTTCAAGAGAAACGTAGTGGCAAAGTATTTATTCTCAATAATAGTACTATGCTTTATTCAAAAAAAAATTACAGTACTATGCTTTTGGGAAATGCAGTCAATATTTGTTGCTTTGGTCCAACTGCTTCTGTGTCCGAGTATAGTTATGATATATCGGCTAGGTCTCAGAAATGCAAACTGAAATTACACTCGTTTGCAAAGAATTTGCATCAAGTTACTTTAGCAACTCTTTCATCAGAGTTCCTTGTGATTCCAATTGGTTCTTCTGAACCTCTCGAGCTTATGCGAATCTTCGTAAATTTACTGACTGGAGAGACAATCACTTTGGAGGTTAATAGTTTAGACACGATATGCAGTGTGAAAGAGAAGATTCTTGATGAGACAGAGTACTCGATGCAGAGCCAACGATTGATCTTTGCCGGCAAGCAACTAGATGACAGCCGGACTGTTGCCGATTACAACATTCAAAATGAGTCAACCATCGACGTTGCCTTCCGCATCCTTGGGGACTAG 1002 0.3892 MEPVDAAKDVGKNSSISVMISNPKVFDCSICFQLLSFPIFQCDNGHIVCSTCCSKFGNKCDKCSKCISLKRCRAFENLLQYIKMPCLNEKYGCKETIDYIQKRKHEEECIYVPCYCPLSGCDFVASSEVLSDHFSHKHEDSQINFYYGFSFLVSLKSDDEVIVLQEKRSGKVFILNNSTMLYSKKNYSTMLLGNAVNICCFGPTASVSEYSYDISARSQKCKLKLHSFAKNLHQVTLATLSSEFLVIPIGSSEPLELMRIFVNLLTGETITLEVNSLDTICSVKEKILDETEYSMQSQRLIFAGKQLDDSRTVADYNIQNESTIDVAFRILGD* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1523 333 Gene3D - 254 333 - -
Mtr2g1523 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 10 256 IPR044286 -
Mtr2g1523 333 SUPERFAMILY TRAF domain-like 82 247 - -
Mtr2g1523 333 SMART ubq_7 258 329 IPR000626 GO:0005515
Mtr2g1523 333 PRINTS Ubiquitin signature 268 288 IPR019956 -
Mtr2g1523 333 PRINTS Ubiquitin signature 289 309 IPR019956 -
Mtr2g1523 333 PRINTS Ubiquitin signature 310 331 IPR019956 -
Mtr2g1523 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 134 IPR013083 -
Mtr2g1523 333 SUPERFAMILY Ubiquitin-like 256 332 IPR029071 -
Mtr2g1523 333 ProSiteProfiles Zinc finger SIAH-type profile. 81 139 IPR013010 GO:0008270
Mtr2g1523 333 Pfam Ubiquitin family 260 329 IPR000626 GO:0005515
Mtr2g1523 333 ProSiteProfiles Ubiquitin domain profile. 258 333 IPR000626 GO:0005515
Mtr2g1523 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 10 256 - -
Mtr2g1523 333 Pfam Seven in absentia protein family 71 238 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1523 Mtr-Chr2 16885903 16887935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1523 258 332 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 61.333 2.35e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1523 K04506 - qsu:112007121 228.024