Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1522 ATGGAGCCTGTTGATTCAGAAAAAGCTGTTGGTAAGAATAGCTCCGTTTCTCTGATGATTTCCAACCCTAAAGTGTTCGATTGCTGCATTTGTTTTCTACTCTTGAGCATTCCAATCTTTCAGTGTAAAACTGGTCATATTGTTTGCTTTACCTGCTGTTCTAAGCTTGGGAACAAGTGCGACAAGTGCTCAAAATGCATTAGCTTAAAACGTTGCAGAGCCTTTGAGAATCTATTGCAATATATCAAAATGTCATGCCCGAATGAAAAATATGGTTGCAGAGAGACAATAGATTACAGTCAGAAGACGAAGCATGAAGAAAAATGCATCTATGTCCCATGTTATTGCCCCATTTCAGGTTGTGATTTTGTTGCCTCATCAGAGGTGTTGTCCAACCATTTCAGCAATAAACACGAGGATTCTCAAATCAAATTTTCTTATGGTCAATCTTTCATTGTCTCCTTGAAGTCTGATGATGATGCAATTATTCTTCAAGAGAAATATGATGGCAAACTATTTATTCTCATTAATAGTACTATCACTACGCTTTTGGGGAATGCAGTCAATATTTGCTGCTTTGGTCCAAATGCTTCCGAGTCCGAGTATAGTTATGGTATCAAGGCCAGGTCTCAGAGATGCAAACTGAAATTACACTCTTTTGTAACGAATGTCCAACAGGTTACTTTAGGAACTCTTTCACCAGAGTTCCTTATGATTCCAAATGGTTCTTCCAAACCTCTCAAGCTAGAAATTTGCATAACTTGCACAAACCCCGTGATGCAAATCTTCGTAAGGGACTTGAATGGAAAGATTATCACTTTGAAAGTTAAGAGTTTAGACACGATATTCAGTGTGAAGGAGCAGATTCATGACAAGAAAACATACCCAGTGCAGGACCAACGATTGACCTTTTGTTGTAGGCAACTACATGACAGCATGACCGTTGCCGATAACAACATTCAAAAAGACTCAACCCTCCACCTCACCCTCCGCCTCCTTGGGGACTAG 1008 0.3968 MEPVDSEKAVGKNSSVSLMISNPKVFDCCICFLLLSIPIFQCKTGHIVCFTCCSKLGNKCDKCSKCISLKRCRAFENLLQYIKMSCPNEKYGCRETIDYSQKTKHEEKCIYVPCYCPISGCDFVASSEVLSNHFSNKHEDSQIKFSYGQSFIVSLKSDDDAIILQEKYDGKLFILINSTITTLLGNAVNICCFGPNASESEYSYGIKARSQRCKLKLHSFVTNVQQVTLGTLSPEFLMIPNGSSKPLKLEICITCTNPVMQIFVRDLNGKIITLKVKSLDTIFSVKEQIHDKKTYPVQDQRLTFCCRQLHDSMTVADNNIQKDSTLHLTLRLLGD* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1522 335 Pfam Seven in absentia protein family 71 225 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr2g1522 335 SUPERFAMILY Ubiquitin-like 255 334 IPR029071 -
Mtr2g1522 335 ProSiteProfiles Zinc finger SIAH-type profile. 81 139 IPR013010 GO:0008270
Mtr2g1522 335 ProSiteProfiles Ubiquitin domain profile. 260 335 IPR000626 GO:0005515
Mtr2g1522 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 257 IPR044286 -
Mtr2g1522 335 SUPERFAMILY TRAF domain-like 83 254 - -
Mtr2g1522 335 SMART ubq_7 260 331 IPR000626 GO:0005515
Mtr2g1522 335 Pfam Ubiquitin family 262 332 IPR000626 GO:0005515
Mtr2g1522 335 PRINTS Ubiquitin signature 270 290 IPR019956 -
Mtr2g1522 335 PRINTS Ubiquitin signature 291 311 IPR019956 -
Mtr2g1522 335 PRINTS Ubiquitin signature 312 333 IPR019956 -
Mtr2g1522 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 134 IPR013083 -
Mtr2g1522 335 Gene3D - 256 335 - -
Mtr2g1522 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1522 Mtr-Chr2 16881003 16883731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1522 260 334 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 60.000 7.11e-22 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1522 K04506 - psom:113275455 230.72