Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1399 ATGGCTGAAATCCACACTCAAACTCCAACAATTAGTCCCATGATAAGCAAACCATGTAATCCTCCACAAGGTTATAAACTCAATTCAATGGTTCTTGTAGCAGCTATAGTATGTGCTTTACTTTGTGCTCTTGGCCTCAACACAATGTTACAATGTGTATTCCAATGTGCCAACCGTGTCCTTACTGAACCTCTACAATGGATTGCTACTCGAAGACGCAATTCCGGACTCAAGAAGAAAGAAATGGTTGCTTTGCCAACATCAATTTATAATACTCATTCACCTCCATCTTTGGATTCTAATTGTGCCATTTGTTTAGCTGAGTTTTGTGATGGAGATAACATGAAGTTGCTACCAAAGTGTAACCATCGTTTTCATGTTGTTTGCATTGATGAATGGTTACTTGCTCATTCTTTTTGTCCTACTTGTAGGAAAATGATCAAGTCCAATGATTCAGTACACTGCTTAAGCATTGTCATATCATAG 486 0.3807 MAEIHTQTPTISPMISKPCNPPQGYKLNSMVLVAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIATRRRNSGLKKKEMVALPTSIYNTHSPPSLDSNCAICLAEFCDGDNMKLLPKCNHRFHVVCIDEWLLAHSFCPTCRKMIKSNDSVHCLSIVIS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1399 161 PANTHER OS06G0666500 PROTEIN 17 155 - -
Mtr2g1399 161 SMART ring_2 102 143 IPR001841 -
Mtr2g1399 161 Pfam Ring finger domain 101 144 IPR001841 -
Mtr2g1399 161 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Mtr2g1399 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 153 IPR013083 -
Mtr2g1399 161 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 17 155 - -
Mtr2g1399 161 SUPERFAMILY RING/U-box 101 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1399 Mtr-Chr2 15245419 15246047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1399 11 145 C3H Transcription Factor Family AT3G10910 36.184 5.29e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1399 - K19040 gmx:100803003 226.098