Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1387 ATGGCTGATAAAAATATGAAAGTGGACTACATAGCTGATGACTTGAAGAGGAAGACAACATTCAACAAAAGGAAGCATGGTATAACTAAGAAGATTAATGAAATCACCACCCTCTGTGGAATTGATGCATGTGGTATAATCTATGATGAAAACAATGATGGAGCAACAGTTTATCCATCAAAAAAAGGAGTCCAAATGGTGTTGGACAAGTTTAAGAGTTTTCCTGAATCGGAACAAAGAAAAGGAATGCTGGATCATGAGGGCTTTTTGAGCCAATCCATAATGAAATCCAAAGAGAAGTTAAAGAAACTAAAGGGCAAGTCCAAGAAGAAGAAAATGAATGATCTACTTGGTGAATTCATTTATACGGGTGAATTTGATGGAAATGTGAGCGAGAGTGATCTCGAAGATCTATCGTCGCTTATTGGTGATTACCGAAAAGAAATCGACGAGAGGATCGAATCAAGTCAAACCTGA 477 0.3732 MADKNMKVDYIADDLKRKTTFNKRKHGITKKINEITTLCGIDACGIIYDENNDGATVYPSKKGVQMVLDKFKSFPESEQRKGMLDHEGFLSQSIMKSKEKLKKLKGKSKKKKMNDLLGEFIYTGEFDGNVSESDLEDLSSLIGDYRKEIDERIESSQT* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1387 158 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mtr2g1387 158 PANTHER MADS BOX PROTEIN 2 155 - -
Mtr2g1387 158 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Mtr2g1387 158 SUPERFAMILY SRF-like 5 95 IPR036879 GO:0003677|GO:0046983
Mtr2g1387 158 CDD MADS_SRF_like 4 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr2g1387 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr2g1387 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mtr2g1387 158 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1387 Mtr-Chr2 15141395 15142336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1387 1 154 Type I MADS-box Gene Family AT5G48670 40.260 2.10e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g1387 SRF-TF 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1387 - - mtr:MTR_2g035580 285.419