Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1386 ATGACTAGGAAAAAGGTGAAGCTCACCTTCATTGTCAATGACGCTGCTCAGAAAGCAACCTATAAAAAAAGAAAGAATAATTTATTGAAGAAGGTCGATGAACTAAGCACGCTTTGTGGTATTGAAGCATGTGCTATAGTTCAAGGTCCTCATGAACCTCAACCTCATATTTGGCCATCATCATGGGGAGTTCATAGGGTGCTCTCAAAATTCAGGACTATGCCTGAATTAGAGAAGAACAAGAAAATGATGAACCAAGAGACATTCATGAGGCAACGGGTTTTGAAGGCTAAGGAGAAAGTGGAAAAACTAAGGAAGGGAAACAGGGAGCAAGAGATGACAATGATCATGTTTCAATGTCTTAATTAA 369 0.393 MTRKKVKLTFIVNDAAQKATYKKRKNNLLKKVDELSTLCGIEACAIVQGPHEPQPHIWPSSWGVHRVLSKFRTMPELEKNKKMMNQETFMRQRVLKAKEKVEKLRKGNREQEMTMIMFQCLN* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1386 122 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr2g1386 122 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr2g1386 122 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mtr2g1386 122 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Mtr2g1386 122 Coils Coil 18 38 - -
Mtr2g1386 122 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 118 - -
Mtr2g1386 122 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr2g1386 122 PANTHER MADS BOX PROTEIN 2 118 - -
Mtr2g1386 122 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Mtr2g1386 122 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1386 Mtr-Chr2 15132685 15133053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1386 1 121 Type I MADS-box Gene Family AT5G48670 59.504 3.07e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g1386 SRF-TF 5.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1386 - - mtr:MTR_2g035610 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1386 2 15132685 15133053 Mtr2g1386 2 15132685 15133053 ECH