Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1366 ATGGCTTCTTCTGGTGTTGAAATTGCGACTTCTTCATCTTTTGGTTGTGTTCTAAGGGACCGTAATCATCGTGATGGATGCAGAGAAAGTAGCAAAGTTAAGGCTACACATGCTGTTTTCCAAAGGAACATTAAGAACTTTGTCATGGACCACCTTAACACGCGCGTTACCATGTCTTCTGATTCTGCAACTAACGAAAACAACAATGAGAGTCAAATGAAGAACAACAACAATAACAATGTTTCTTCTTGGGCTTCAAAAGGTAGCACCAATCTTGCAAGGCTTCATTTGAAGCGAAACAATCACAATGGCATCATCAACAACAATAAGGATAACGAAAATGAGCCATCCTTGGCTTCGTTGATTAGCCCGAGACATTCGCGCCTTCTTGATCGATGGGCTGCGAGACAAGCTCGTGAGATGGTGTCAAATTTGGAGAATGAAGCTGAATTGTTGTCCATTGATGATAATACTAACAATAACAATGACATGCCTGCAGTTGTAAGGACATCTAGTTCTACCTCGGATGAATGTTCTTCGGAGAAATTGAACGTTGGTGCGTCTTCCCTTGTTCAATTATGGGAAAAGAGGCTTAACAATTCAAATGGATCCAAACCAAACACTCCAATGGAGAAAACAAGTCCAACTGGTGTGACAAGTGCAACTTGCAACAATGAGAATGTGTTTGTTGTTAACACTCCAATTGAGAAAACAAGTCCAACTGGTGGTGCAAGTGCAACTTGCAACAATGTGAATGTGTTTGTTGTGGAAGAACAAAGAGGGTCGGAAATAGGAGAGGGTTTTGAAGGACCGTTATCATCAGGGAACGAAGAATCGTTTTCGTTTTCTTCGTTCACTGATTGGGATTCTGATAAGACAGGTGATCAGAGTAGGTTGTGTTCAGTTGATCAAAGTAGGAAGAATTCGTCGGAAAGTGATAGAGTTAGTGTTGCTGATATCATAAAGAAACTCACTGCTACAAGTCAAACTCAGAGTTCACCTCCATCTTCTGGTGATGAAAATGATCATGAAGGATGTGGTGGTGGCAGTGTGGCAAGTTCTCCTCGTAAAGATTTTGCACCAGAACTTTCAGAACAAAGAGCCTTTCCTCAGGTTACTTGTTCAACAAGAATTAGAGGACGTCGAGCTTTCAATGATTTGCTTATGCAGTTGGAGCGTGATAGGCATGGGGAGCTAAAGAACTTGGCTGAACGTGGAACTGTCTCCAAGTTCGCACAAAAAGGTCGCATTCAGGCATTACTTCGACTTAAATTGTTACGTGGCGCGGCAGCTAATGTTCCATCACACCAGAAATCAACATCATCTGAAGTATACAGACGAGTACAACCACACGGATCTGCAATTATGCAACTAAGGAGAAATTTTAGCACTAGGGTTGAAGAAAAAAATACAGTACAGGCAGAAGTAGCAAACACACGAAGTCCTCCCAAAGAGATAGTAAACAACATCACACAATTAGAAAACTCTACCACTGCTGATCAAATCAGTAAAGACACAAGCGGCCAGATTGTGCATGGAACTGTCAGTCGTGCCATAGAATTGACAAAGTCAGAGACTCAGACTAGTGAAGAAGATCATCCAAGCTCAACTGTCATGTCTCAAGAAACATGTTTTGAGGCTCAGCATGATTACTCTGAGGAAGAGGAAATTAACCAGCAAAATGATGAAACTAGTTGTGATTGTGCAGTAGAAGAGGAAGCAAGTAATCAGAACTATGCTGAAAGCAGTTATGAAGAGATGGTGGAAGAGAACTATGATGAAAATAATTATGACTGGATCAGTGAAATTTCTCGACCGAGGAGCTATTGGGAAGAGCAGAGACAAGCATGGTATAGAGAGATTCTTGACACTGGTTCTCCAAATGAAGATATACAAGTGCTACTTCAAAGAAGAACAGTTTCAACATTCCTATCCAGTGGCTTCCGTGAAACAATGGATAGGTTGATGCAATCTCATAGAGGAACACAAACACATCTAGTTAGTAGTCAAGATGATGAGATAGACAATGAAGGGTTGATGGCGTTTTTCCAAGAACACTTGTATCCTGGAAGATCTCCTCAAGAAAATGGAACAGAGAGAACGGTAGACGAAGAAGAAGAAAGGGTAAATGAGGAGGAGGAGGAGAAGCAAGATGAGAAAGAGCATGAAGAGGAGCAAGGAGGGGAGAGCTTGATTAGTAGTAGCTTGGTTAGTAGTTTGTGCCATGAAGTCGGAGACTATTCTAATCAATCCTCATCATGGAGTTATAGAGACAATGAAGCTGGTGATGATTTTGATAGAGTTGCTTCTACATCTTCACAACCTTATCAATCTCAGTCTTCCTATCATGATAATCGGCCAAACTCCGCATCTACCAATCATCATTCAATTGAAATGGATCTCATATATGATATGAGAGGCCATATGGAGCAACTTTATCAAGAGATGAGTGAACTGAGGAAATCAATAAAGAGTTGCATGGATATGCAGATGCAGATGCAGTTACAAAAATCCAATAACCAAAGGGTGCAAACAGCTGAAAAAGAAGAAAAGAAGTCACATAACAAGACTGGTAAGAAAGGAAACTGCTGCATTTGCAATGAGATGAAAGTTGACTCAGTTCTATACAGGTGTGGACACATGTGTGCATGTCTGAAATGTGCCAATGATTTACGGTGGAACAACGGAAAATGTCCAATATGCCGTGCTAATATAGACGATGTTGTTCGAGTTTATCTTGATGTATAG 2748 0.409 MASSGVEIATSSSFGCVLRDRNHRDGCRESSKVKATHAVFQRNIKNFVMDHLNTRVTMSSDSATNENNNESQMKNNNNNNVSSWASKGSTNLARLHLKRNNHNGIINNNKDNENEPSLASLISPRHSRLLDRWAARQAREMVSNLENEAELLSIDDNTNNNNDMPAVVRTSSSTSDECSSEKLNVGASSLVQLWEKRLNNSNGSKPNTPMEKTSPTGVTSATCNNENVFVVNTPIEKTSPTGGASATCNNVNVFVVEEQRGSEIGEGFEGPLSSGNEESFSFSSFTDWDSDKTGDQSRLCSVDQSRKNSSESDRVSVADIIKKLTATSQTQSSPPSSGDENDHEGCGGGSVASSPRKDFAPELSEQRAFPQVTCSTRIRGRRAFNDLLMQLERDRHGELKNLAERGTVSKFAQKGRIQALLRLKLLRGAAANVPSHQKSTSSEVYRRVQPHGSAIMQLRRNFSTRVEEKNTVQAEVANTRSPPKEIVNNITQLENSTTADQISKDTSGQIVHGTVSRAIELTKSETQTSEEDHPSSTVMSQETCFEAQHDYSEEEEINQQNDETSCDCAVEEEASNQNYAESSYEEMVEENYDENNYDWISEISRPRSYWEEQRQAWYREILDTGSPNEDIQVLLQRRTVSTFLSSGFRETMDRLMQSHRGTQTHLVSSQDDEIDNEGLMAFFQEHLYPGRSPQENGTERTVDEEEERVNEEEEEKQDEKEHEEEQGGESLISSSLVSSLCHEVGDYSNQSSSWSYRDNEAGDDFDRVASTSSQPYQSQSSYHDNRPNSASTNHHSIEMDLIYDMRGHMEQLYQEMSELRKSIKSCMDMQMQMQLQKSNNQRVQTAEKEEKKSHNKTGKKGNCCICNEMKVDSVLYRCGHMCACLKCANDLRWNNGKCPICRANIDDVVRVYLDV* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1366 915 Coils Coil 809 829 - -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 521 541 - -
Mtr2g1366 915 SUPERFAMILY RING/U-box 862 907 - -
Mtr2g1366 915 Coils Coil 695 726 - -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 199 221 - -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 766 793 - -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 705 720 - -
Mtr2g1366 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 835 914 IPR013083 -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 686 733 - -
Mtr2g1366 915 CDD mRING-HC-C3HC5_NEU1 862 902 - -
Mtr2g1366 915 Coils Coil 135 155 - -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 274 290 - -
Mtr2g1366 915 ProSiteProfiles Zinc finger RING-type profile. 863 902 IPR001841 -
Mtr2g1366 915 PANTHER BNAC05G24000D PROTEIN 1 914 - -
Mtr2g1366 915 Pfam Zinc finger, C3HC4 type (RING finger) 860 908 - -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 322 339 - -
Mtr2g1366 915 PANTHER BNAC05G24000D PROTEIN 1 914 - -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 765 793 - -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 264 366 - -
Mtr2g1366 915 MobiDBLite consensus disorder prediction 59 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1366 Mtr-Chr2 14901189 14906106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1366 855 911 C3H Transcription Factor Family AT3G06140 35.088 1.32e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1366 - - mtr:MTR_2g437720 1692.55