Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr2g1356 | ATGGAAGCATACGGCGGTTACTTGGTGGATAAGGAAGCCGTTACGCTTGTTGAGAACAAATTCTTAGATTTTCTCAAAAGCTTCAGGTTCAGGCAACAGAATGAGCTGTATTATAAAGAAGAGGTAGAAGTGATGATAAGCAATGAGTCAAATACCATGTTCATTGATTTCGAACATGTCATGAAACACAATGATGTTTCACAGAAAGCAATCTCAGATGAATATTTGAGGTTTGAACCTTATTTGCAAAATGCTTGTAAGAGGTTTGTCATGGATTTGAAGAAAACCAACAAATTATATGAGGATAGCCCTAACAAGGACATTAACATTGCCTTCCACAACATTCCAATGGTGAAACGGTTAAGGGAATTGACTACATCAGAGATTGGAAGGCTTGTATCTGTGACAGGAGTTGTAACAAGGACAAGTGAGGTTCGACCGGAGCTTCTCCATGGAACCTTCAAATGCCTAGAATGTGGTGGGATGATAAAGAATGTAGAACAACAGTTCAAGTATACTGAGCCAAAGACCTGTCCGAGTGCAACCTGCAACAATCGAACAAATTGGGCACTGTTGCGTGAAGAGAGCAAATTTACTGACTGGCAAAAGGTCAGAATGCAGGAGACATCCAAAGAGATACCTGCAGGCTCATTGCCAAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTCGAACATGCCAGGGCTGGTGACACGGCGATTTTTACGGGTACTGTAGTTGTTATACCTGATATATTGGCATTGGCGTGCCCTGGACAGAGGGCAGAATACCACCGGGAAGCTTCTCAACGCAAGGGTTCCACATCTGGTAATGAAGGTGTGAGGGGCCTTAAGGCTTTGGGAGTCAGAGATCTCTCCTATCACCTAGCTTTTATTGCAAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAACAGATATCAGGAATAGGAACAATGATTCAGATGAAGATGATCATCAATTTACTGAACAGGAACTGGATGAAGTTGAACGGATGAGGAACACTCCCAATTTCTTCCATAAACTTGTTGACAGCGTTGCACCAACGATTTTTGGTCATCGAGAAATAAAGCGAGCAATCCTTCTTATGCTTGTGGGTGGTGTCCACAAACTTATTCATGAAGGCATCAACCTCGGAGGGGACATCAATGTCTGTATTGTAGGAGATCCCAGCTGTGCAAAATCTCAGTTTCTCAAGTATACTTCAAGCATCGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGCTTGACTGCAACTGTTGCTAAGGAACCAGAAACTGGGGAATTTTGTATCGAGGCTGGAGCTTTGATGCTTGCTGACAATGGCATTTCCTGCATCGATGAATTTGATAAGATGGACACCAAAGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACTATCAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCCCGTACTTCCATTCTTGCCGCTGCCAATCCTTCTGGGGGAAGATATGATAAGTCTAAATCACTGAAGTACAATGTGGCTCTTCCACCAGCTATACTTTCTAGGTTTGATCTTGTATATGTTATGGTTGATGACCCGGATGAAACAATAGATGCCAACATAGCTCAACATATCGTGAAAGTTCATCAAAAGCGCAATGATGCTTTTGATCCCGCATTCACCACAGCAGAACTAAAGCGTTACATTGCCTATGCAAAAACTCTCAACCCAACGCTCACATCAGCTGCCAGAAATCGACTTGCAAACTCTTATGTTTCTCTCCGTAGGAGTGATGCATATCGTATGACCGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCGGAAGCCACTGCACGGATATATTTGGAAAGTCAGGTACAACTTCATCATGTTCATTTAGCTGAGCAAATGCTTAAAACATCAATAATAAGAGTGGAGTCTAGTGAGATTGATCGGTCCGAGTTTCAAGAACCAAACATGGAGGACGACACAGAAAGTCCAGCAGATGATGGATCTTACCCCCAAGGGAAGAAAATTACTATAAGCTATGAAAAATTTCAGAAGATTACTAGGGCCCTTGTAGTGCACCTTAGACAGCACGAAGAGAACGTGGAGCGCCTTAGACAGAACGAAGAGACTGAGGTGCAAGAAGGAACTGGTTTGTCCGGAATGAAGCAACGAGATTTGATTAAGTGGTACGTAGAACTGCAAAATGAGAAAAATAAATACAGGTCTGCGGAGGATGCAGCGCAAGAAGTTAGCGAAATTAAAACAATTATAGAGATCTTAGTTCAAAGAGAGGGACATTTGATAGTGGTAGATGATGGTAGGCAAACAGAAGCACAAGCTGCAGGTGGAGAGCACTCCGCATCGGTGTCCATAAATGATCGAATTTTGGCTGTCGCTCCTAATTACTCCCTCTAA | 2442 | 0.4271 | MEAYGGYLVDKEAVTLVENKFLDFLKSFRFRQQNELYYKEEVEVMISNESNTMFIDFEHVMKHNDVSQKAISDEYLRFEPYLQNACKRFVMDLKKTNKLYEDSPNKDINIAFHNIPMVKRLRELTTSEIGRLVSVTGVVTRTSEVRPELLHGTFKCLECGGMIKNVEQQFKYTEPKTCPSATCNNRTNWALLREESKFTDWQKVRMQETSKEIPAGSLPRSLDVILRHEIVEHARAGDTAIFTGTVVVIPDILALACPGQRAEYHREASQRKGSTSGNEGVRGLKALGVRDLSYHLAFIANSVQICDGRRETDIRNRNNDSDEDDHQFTEQELDEVERMRNTPNFFHKLVDSVAPTIFGHREIKRAILLMLVGGVHKLIHEGINLGGDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGISCIDEFDKMDTKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPSGGRYDKSKSLKYNVALPPAILSRFDLVYVMVDDPDETIDANIAQHIVKVHQKRNDAFDPAFTTAELKRYIAYAKTLNPTLTSAARNRLANSYVSLRRSDAYRMTVRQLEALIRLSEATARIYLESQVQLHHVHLAEQMLKTSIIRVESSEIDRSEFQEPNMEDDTESPADDGSYPQGKKITISYEKFQKITRALVVHLRQHEENVERLRQNEETEVQEGTGLSGMKQRDLIKWYVELQNEKNKYRSAEDAAQEVSEIKTIIEILVQREGHLIVVDDGRQTEAQAAGGEHSASVSINDRILAVAPNYSL* | 814 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr2g1356 | 813 | Coils | Coil | 696 | 723 | - | - | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 386 | 401 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 446 | 460 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 474 | 487 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 498 | 510 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 525 | 533 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 75 | 87 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 118 | 130 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 168 | 185 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 221 | 232 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mtr2g1356 | 813 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 280 | 301 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mtr2g1356 | 813 | SMART | mcm | 117 | 649 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr2g1356 | 813 | Coils | Coil | 319 | 339 | - | - | |
| Mtr2g1356 | 813 | Pfam | MCM AAA-lid domain | 570 | 648 | IPR041562 | - | |
| Mtr2g1356 | 813 | Pfam | MCM OB domain | 121 | 249 | IPR033762 | - | |
| Mtr2g1356 | 813 | Gene3D | - | 121 | 249 | IPR012340 | - | |
| Mtr2g1356 | 813 | Gene3D | - | 681 | 813 | - | - | |
| Mtr2g1356 | 813 | Pfam | MCM P-loop domain | 333 | 555 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr2g1356 | 813 | Pfam | MCM N-terminal domain | 19 | 114 | IPR027925 | - | |
| Mtr2g1356 | 813 | Gene3D | - | 9 | 117 | - | - | |
| Mtr2g1356 | 813 | ProSiteProfiles | MCM family domain profile. | 345 | 551 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr2g1356 | 813 | Gene3D | - | 148 | 199 | - | - | |
| Mtr2g1356 | 813 | SUPERFAMILY | Nucleic acid-binding proteins | 21 | 251 | IPR012340 | - | |
| Mtr2g1356 | 813 | MobiDBLite | consensus disorder prediction | 656 | 681 | - | - | |
| Mtr2g1356 | 813 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 355 | 653 | IPR027417 | - | |
| Mtr2g1356 | 813 | CDD | MCM6 | 348 | 647 | - | - | |
| Mtr2g1356 | 813 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 8 | 763 | - | - | |
| Mtr2g1356 | 813 | Gene3D | - | 326 | 666 | IPR027417 | - | |
| Mtr2g1356 | 813 | Coils | Coil | 739 | 762 | - | - | |
| Mtr2g1356 | 813 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 8 | 763 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr2g1356 | 813 | Pfam | MCM6 C-terminal winged-helix domain | 683 | 812 | IPR041024 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr2g1356 | Mtr-Chr2 | 14774400 | 14780388 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr2g1356 | 1 | 813 | Core DNA Replication Machinery Family | AT5G44635 | 65.621 | 0.0 | 1125 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr2g1356 | K02542 | - | vvi:100260804 | 1160.21 |