Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1354 ATGGCTTCCTCCAGTAAACGCCCTGCTCCAACCGGGATTTTGCCTGAAGAAGGACGCAAAAAACTTAAACTGTCAAGTGATAGCTTGCCATGTTTAACACATGGTGATGTTGTAGATTACAGCAGTCCGTATGCAATTTCAAATGTTATAAATCGCTTAGAGAGTGGAAAATTTGGAAGTGTGACAAAAAATATTGAAGACCTTATAACCCAGAAAATGCAAATATTGGGCCCTTACTTTGCAAAATGTCCTAGACTTGTTAATCAACTATTGAGAGTGGTGACAGATCATGATGAAGAAACTCCCAACATGGAAAATAAGAACGTTAATGGTTTGCAACATGATAATGTCATAGATTTGGATTCGGACGGGGAGCACACTGAAAAGGATATTTTGGCACCAAAAAGAGGATATAATGTTACTGCAGTACCATTTATCATTGATTCAGATGAGGAGGATGATAAGGATCATGGTCATGATACTGTTCCAACAGATCATGATGAAGAAACTCCCTACATTGAAAGTGAAAAAGCTGCTGGTATGTCCTATGAAAATGTTACCATTGATTCAAATGAGGAAGATGATAGGGATCAAAAAAAGGATATTTTGGCACCGAAAAGAGAAAATGATGTTCCTCCAGCACCATTTCATGAAGTCATTATCATCGATTCAGACGAAGAAGATGATAGGGATCATGATGAAGAAACTCCCAACATGGAAAATGAAAAAGTTACTGGTTTGTCCTGTCAAAATGTTATCATCGATTCAGATGAGGAAGATGATAGGAATCATGATGAAGAAACTCCCAACATGGAAAATGAGAAAGTTACTGGTATGTCCTGTCAAAATGTTATCATTGATTCAAATGGGGAAGATGACAGAGATCAAACTTCTTTTCTTCCATTTCATGAAGTTGCATTGCCAAAACCAGTTCAGTCTCCTGCATTAGAAATGATTGGATATCATGATCCCAATGCTTACCATGGAGAACATGCAGATCTAAAATTTGAAACAAGTCTGCTTCCTAAAGATAACTCAAAGAAAGACAAAGGTAATTATGTTGGAGTACATGTGGAAGAAGATAATAAGGAATTGGAAACAAGTCTGTCTCCTGAAGATAACACAAAGAAAGACAAAGGTGTTTATGTTGGTGTAAGTGAGGAAGAAGATAACAAGGTTGATACTGAAGATGACGGGCTAGAAGATGTTTGGAGGGAGATGGCAATGGCAATGGAAACTTCTAAAGATGTTTCTGCAGATCAACCACCCGAAGAAGAGGAAAATGACGCTGACTGTGATCATTCTTTCATTTTAAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAATTCCAATACAAGGTTAAAAAGAGCACAAGAACTTATATGTCTGAATCATGGAATGCCAAAGAAAAAGCTGATATATTTGGAGTTAAGATTGCTAAAGATGATCTCTCAGTAACTGAAATATCAGCACATCCTCAACATGCAAATCAAATGAAACCGCACCAAGTCGAAGGATTCAATTTTCTTGTCAGCAACCTGGTGGGAGACCATCCTGGGGGATGCATTCTGGCTCATGCTCCAGGATCTGGAAAGACATTCATGGTTATCAGTTTCATACAGAGTTTTCTAGAGAAGTATCCCGATGCACGACCTCTCGTGGTGCTTCCTAAGGGAATACTATCAACTTGGAAAAAGGAGTTTCTGACATGGCAAGTGGAAGATGTACCGCTTTATGATTTTTACAGTGTGAAGGCTGACAGTAGATCACAACAATTGGAAGTCTTAAAACAGTGGGTGGATAACAAGAGTATCCTTTTCTTAGGATACCAACAGTTTTCGTCCATTATTTGTGATAACTGTAGTAACAATACATCAATATCTTGCCAAGATATATTGCTTAAGAAACCATCAATTCTCATTTTAGATGAGGGACACACTCCTAGGAACGAGAATACGGATACGGTACAGTCCCTCGCAAAAGTACAAACACCAAGAAAAGTTGTTTTGTCCGGAACTTTATATCAAAATCATGTCAAGGAGGTATTTAACGTGCTTAACCTTGTCCGCCCAAAGTTTATAAAGATGGAAACGTCTAAACCTATTGTCCAACGCATTAGGAGTAGGATCCATTTACCTGGTGTGAAAGACTTCTGTGATTTGGTTGAAAACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAGTAGCTGTTATACATGATTTGCGGGAGATGACCAGCAAGGTACTGCACTATTATAAAGGCGATTTTCTTGATGAGCTTCCTGGCTTAGTTGATTTTACTGTGGTGCTCAATATGACACCCAGACAGAAGCATGAAGTTAAGACAATAAAGAGGGTATTTAGAAAGTTCAAGGCTTCTTCTGTAGGTAGTGCTGTATACCTGCACCCAGACTTGAAACCAATTGCAGAGAAGTGTAGTGAAAATTCTATATCTGAGCATACAATGGATGATTTAATAGCGAACCAAGATGTGAGAGACGGGGTGAAATTAAAATTCTTTCGCAATATGCTGAATCTATGCCAATCAGCTGGGGAGAAGCTTTTGGTATTCAGTCAATATCTCTTGCCTCTAAAATATTTGGAAAGGTTAGCTATGAAATGGAAGGGCTGGAGTCTTGGAAAAGAAATTTTTGTAATTTCAGGAGAATCGTCCACTGAACAAAGGGAGTGCTCCATGGAAAAATTCAACAATTCACCCGAGGCCAAAATCTTTTTTGGGTCAATCAAAGCATGTGGTGAGGGTATATCATTGGTTGGAGCATCCCGTGTCATCATCTTAGATGTGCACCTCAACCCGTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGACCAGGCCAGAAAAGGAAAGTGTTTGTGTATCGATTGATAGCTGCTGATTCTCCAGAAGAGGAAGATCACAGTACTTGTGTCAAGAAGGAATTAATTTCGAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAAAGCTTTTGAAGTTGAGACAGTTGATGTGAAGGAATGTGGTGATATGTTTCTAGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCCCTGTATAAAAGGTAA 3129 0.3883 MASSSKRPAPTGILPEEGRKKLKLSSDSLPCLTHGDVVDYSSPYAISNVINRLESGKFGSVTKNIEDLITQKMQILGPYFAKCPRLVNQLLRVVTDHDEETPNMENKNVNGLQHDNVIDLDSDGEHTEKDILAPKRGYNVTAVPFIIDSDEEDDKDHGHDTVPTDHDEETPYIESEKAAGMSYENVTIDSNEEDDRDQKKDILAPKRENDVPPAPFHEVIIIDSDEEDDRDHDEETPNMENEKVTGLSCQNVIIDSDEEDDRNHDEETPNMENEKVTGMSCQNVIIDSNGEDDRDQTSFLPFHEVALPKPVQSPALEMIGYHDPNAYHGEHADLKFETSLLPKDNSKKDKGNYVGVHVEEDNKELETSLSPEDNTKKDKGVYVGVSEEEDNKVDTEDDGLEDVWREMAMAMETSKDVSADQPPEEEENDADCDHSFILKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYMSESWNAKEKADIFGVKIAKDDLSVTEISAHPQHANQMKPHQVEGFNFLVSNLVGDHPGGCILAHAPGSGKTFMVISFIQSFLEKYPDARPLVVLPKGILSTWKKEFLTWQVEDVPLYDFYSVKADSRSQQLEVLKQWVDNKSILFLGYQQFSSIICDNCSNNTSISCQDILLKKPSILILDEGHTPRNENTDTVQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFIKMETSKPIVQRIRSRIHLPGVKDFCDLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNMTPRQKHEVKTIKRVFRKFKASSVGSAVYLHPDLKPIAEKCSENSISEHTMDDLIANQDVRDGVKLKFFRNMLNLCQSAGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGESSTEQRECSMEKFNNSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEEDHSTCVKKELISKMWFEWNEYCGDKAFEVETVDVKECGDMFLESPLLGEDVKALYKR* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1354 1042 SMART ultradead3 507 717 IPR014001 -
Mtr2g1354 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 647 1005 IPR027417 -
Mtr2g1354 1042 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 525 704 IPR014001 -
Mtr2g1354 1042 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 209 1042 IPR044567 GO:0080188
Mtr2g1354 1042 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 17 190 IPR044567 GO:0080188
Mtr2g1354 1042 SMART helicmild6 881 966 IPR001650 -
Mtr2g1354 1042 Pfam Helicase conserved C-terminal domain 854 965 IPR001650 -
Mtr2g1354 1042 Gene3D - 774 1030 IPR027417 -
Mtr2g1354 1042 Gene3D - 478 724 IPR038718 -
Mtr2g1354 1042 CDD SF2_C_SNF 849 977 - -
Mtr2g1354 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 729 IPR027417 -
Mtr2g1354 1042 Pfam SNF2-related domain 531 808 IPR000330 GO:0005524|GO:0140658
Mtr2g1354 1042 MobiDBLite consensus disorder prediction 174 198 - -
Mtr2g1354 1042 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 852 1020 IPR001650 -
Mtr2g1354 1042 PANTHER PROTEIN CHROMATIN REMODELING 35 17 190 - -
Mtr2g1354 1042 PANTHER PROTEIN CHROMATIN REMODELING 35 209 1042 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1354 Mtr-Chr2 14741820 14748548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1354 863 994 RAD5 or RAD16-like Gene Family AT5G43530 37.121 2.78e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr2g1354 SNF2_N 2.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1354 K10875 - gmx:100795356 1235.71