Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1343 ATGGTTGATAACTTTGGAGGTAGTTCGTCTAATGACAATGGCGGTATCAAGGAACAAGACAGGTTGCTTCCAATAGCCAATGTTGGTCGGATAATGAAGCAGATTTTGCCTCAGAATGCGAAAGTATCGAAGGAAGCAAAGGAAACAATGCAAGAATGTGTGTCCGAGTTCATAAGCTTCGTGACGAGTGAAGCATCGGAGAAATGCAGGAAGGAAAGGAGAAAGACTGTAAATGGTGATGATATTTGTTGGGCTTTAGCAACACTTGGTTTTGATGATTATGCTGAGCCAATGAGAAGGTACTTGCATAGGTATAGAGAGTTAGAAGTTGATAAAATTAATACTAATAATCAAGAAATTAGAGGTGGAAATAGTCCTCAAGAGATAAATGAAATTTATAGAGGCTCATCCGTCTTACGAGGTCCACCAACGACACGTCCCTCTGGGGGCCAAGGCCCTCTACTACTGGTCGGCAAGCGAACGACGAGCACACACATCGCTTCTAACCCGTATTCTGACTTAGATGCGTTCAGTCATAATCCAACGTACGGTATTTTCACGCTACTGGCTTTTCAACCAAGCGCGATGACCAATTATGTGAATCAACGGTTGCTCTCGTACTACTAA 627 0.429 MVDNFGGSSSNDNGGIKEQDRLLPIANVGRIMKQILPQNAKVSKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDKINTNNQEIRGGNSPQEINEIYRGSSVLRGPPTTRPSGGQGPLLLVGKRTTSTHIASNPYSDLDAFSHNPTYGIFTLLAFQPSAMTNYVNQRLLSYY* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1343 208 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr2g1343 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Mtr2g1343 208 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 129 - -
Mtr2g1343 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr2g1343 208 SUPERFAMILY Histone-fold 19 116 IPR009072 GO:0046982
Mtr2g1343 208 Gene3D Histone, subunit A 10 133 IPR009072 GO:0046982
Mtr2g1343 208 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Mtr2g1343 208 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Mtr2g1343 208 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1343 Mtr-Chr2 14600988 14602818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1343 4 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.992 1.65e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr2g1343 CBFD_NFYB_HMF 2.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1343 K08065 - gmx:100794513 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1343 2 14600988 14602818 Mtr2g1343 2 14600988 14602818 ECH
Mtr4g4361 4 57671493 57672710 Mtr2g1343 2 14600988 14602818 PCT