Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1272 ATGGGACAAGAATCATCAGATTACAAAAACCAGTTGGTATTAGATATATGCTCCATTTCCAACCGTTCAGTTCTATGTGTTCATACACTTTCTTCCTCTAATGCACATTTCATTGATTGGTATTGCATTCTTGGTGTGGAAGAAAATGCAGGTGTAAATACCATTCGGAAGAAATATCATAAACTTGCCTTGCAACTTCATCCAGATAAGAATAAACATCCCAAGGCTGAAATTGCATTCAAGCTTGTCTCTGAGGCCTATACATGTCTATCTGATGCTGCAAAAAGGAAAGCTTTTAACTTAGAAAGACACAAGCGCTTCTGCATTGAGTGCAAGAAAATTCCATATAAATCCAACATTATTCCTAGCAATTCTAATGGTTCAAGTTTCAAGCCATGGAACATTATCAGCAAATCAATATCTAGTAAAGTTAGAAGAAACATTAAGGACATGAGAGAAAGATTAAAGGAAGAGGCTAAGGTGATAGAGAATTGTCTAAGAAAAAATTCAGTGTCGAAGAGAGAATCTCCACTTTATAATCCACCCATGTATCATCTACATGGAGACAAGTCAGAACATCGAGTTGAGAAAGAAATTCCTGTTTTCAATCCATCAAATTACAAGTACCAAAGTTACCCTCGTCCTAGAGACCATGCTTACAAGAATTCCAAGACTTTTTGGTACTTGCAGAAAGAAAATATGGTGCGCAATGACAAGGGAGATGCTAAAGCGAAGTATACCTCTCCGGTTTTTGAAGTCAAATCAAGTAGTATGGACACAAGAAAATTTACTTGTGTTTCGTCACAGTGTTAG 813 0.3665 MGQESSDYKNQLVLDICSISNRSVLCVHTLSSSNAHFIDWYCILGVEENAGVNTIRKKYHKLALQLHPDKNKHPKAEIAFKLVSEAYTCLSDAAKRKAFNLERHKRFCIECKKIPYKSNIIPSNSNGSSFKPWNIISKSISSKVRRNIKDMRERLKEEAKVIENCLRKNSVSKRESPLYNPPMYHLHGDKSEHRVEKEIPVFNPSNYKYQSYPRPRDHAYKNSKTFWYLQKENMVRNDKGDAKAKYTSPVFEVKSSSMDTRKFTCVSSQC* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1272 270 PANTHER BNAC03G44070D PROTEIN 4 257 - -
Mtr2g1272 270 Pfam DnaJ domain 39 100 IPR001623 -
Mtr2g1272 270 Coils Coil 148 168 - -
Mtr2g1272 270 ProSiteProfiles dnaJ domain profile. 39 103 IPR001623 -
Mtr2g1272 270 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 257 - -
Mtr2g1272 270 PRINTS DnaJ domain signature 41 59 IPR001623 -
Mtr2g1272 270 PRINTS DnaJ domain signature 59 74 IPR001623 -
Mtr2g1272 270 PRINTS DnaJ domain signature 75 95 IPR001623 -
Mtr2g1272 270 CDD DnaJ 39 92 IPR001623 -
Mtr2g1272 270 Gene3D DnaJ domain 38 159 IPR036869 -
Mtr2g1272 270 SMART dnaj_3 38 95 IPR001623 -
Mtr2g1272 270 SUPERFAMILY Chaperone J-domain 30 104 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1272 Mtr-Chr2 13793992 13795918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1272 39 100 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 2.14e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1272 - - gmx:100781104 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1272 2 13793992 13795918 Mtr2g1272 2 13793992 13795918 ECH
Mtr4g4409 4 58065694 58067150 Mtr2g1272 2 13793992 13795918 PCT