Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1248 ATGAAACTCAACAACAACAACAACAAAATTTCCATGTCAACCTCAACTTCACCATCAAACTCCGGCAACCTTGTCTCCGACCAGTTTCCGGCGGGTCTCCGTGTACTTGTTGTCGATGATGACCCTACTTGCCTCATGATCCTTGAAAGAATGCTCCGTTTTTGCCTCTATGAAGTTACCAAATGTAAGAGAGCTGAGGTTGCATTATCACTTCTTAGAGAGAATAAAAATGGGTTCGACATTGTTTTAAGCGATGTGCATATGCCGGATATGGATGGATTCAAACTTTTGGAACATATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCGGCTGATGATGGAAAAAACGTGGTAATGAAAGGTGTGACACATGGTGCTTGTGATTATCTAATCAAGCCTGTGCGAATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTAGGAAGAGAAAGAATAGCTGGAAAGATCTGAGGCAATCTGGTGGATTAGATGAAAGAGATCGAGAAAAAAAGGCATCCACTGATGCTAATTACTCATCTTCAACGAATGAAGGCAAGAGCTCAAAGAAGAGGAGGGATGAAGAAGATGAAGCAGATGATAGGGATGATTGTTCGACGTCAAAGAAGCCGCGAGTTGTTTGGTCTATTGAGCTTCATCAGCAGTTTATGGCTGTTGTGAATCAATTGGGATTAGACAAGGCTGTTCCGAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCCAGTCATCTTCAGAAATACCGTTTGTATCTTCGAAGGTTGAGTGGAGTTTCCCAGCAGCAAAGTAACTTGAATAACTCCTTCATGAGTGCGCAAGAGTCAATATTTGGAGGAACCTCTGTAAATGAAATTGATCTTCAAACCCTTTCAGCTTCTGGCCAGTTCTCGGCGCAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTTACAGTCCTGAGAACTCAAAACTAAGATTTGGAGATGGGCAACTGCAACATATGAGCAGCAGTAAACCGGTGAACTTTCTTCACGGAATCCCTATCAACATTGAGCCGAAGCAGTTTGCCAATTTTCACCAGTCTGCTCAATCCTTTGGCAGCGCAAATATGCGAGTCAATGCTTCTGCTGCAAAGAGAAGCCCCTGGTTGACGCAGATGGCTCAGTCTCAACCAAGAGGTCAGGTGCTAAATGAGAATACAAATTCTCATGCTACAATGTTTCCATCATCTTTAATGCAACCTACAGGACCAAATGGAATATCAGTCAATAGTTTCCCTCTTAGATGCACTTCAGGTATATCCAGTAGCAGTACAAAAGGTGCATTTCATGCGGAAGCTACTTCGGGAATTAAAGGATTAGGGGGATTTAGTTATGATGTTTATAATGAACTCCATCGGAAGTCCAATGATTGGGGATTAGCAAATACAGGCCTGACATATGATGGTTCTCAACATTCAAATACTTTACAAGGCAACATTGATGTCTCGCCGTCGATTTTAGGCCATCGTGGTTTTTCCTCTATCCAACAGACTCGACAAAATAGAGATGGTATGAGTCAAGGTGATCACCAAAATGTTGGTCAACACCTCAATACACCTTTTGTTGATAATTCATTAAGGGGTAAGAGTGAAAGAATTCCGGGTACAAACATCGAGATTAACCCCTTCTCTGATCAAAGTCAAGAGGATCTCATGAGTGTGTTTCTGAACCAGCACAAAGGCATTGGACAAGTTGATAATGAGTTTGACTTTGATGGATATTCCATAGACAACATTCCAGTTTATAACAGATCCTGTTAG 1821 0.4179 MKLNNNNNKISMSTSTSPSNSGNLVSDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNSWKDLRQSGGLDERDREKKASTDANYSSSTNEGKSSKKRRDEEDEADDRDDCSTSKKPRVVWSIELHQQFMAVVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNSFMSAQESIFGGTSVNEIDLQTLSASGQFSAQSLAKLQAAGLYSPENSKLRFGDGQLQHMSSSKPVNFLHGIPINIEPKQFANFHQSAQSFGSANMRVNASAAKRSPWLTQMAQSQPRGQVLNENTNSHATMFPSSLMQPTGPNGISVNSFPLRCTSGISSSSTKGAFHAEATSGIKGLGGFSYDVYNELHRKSNDWGLANTGLTYDGSQHSNTLQGNIDVSPSILGHRGFSSIQQTRQNRDGMSQGDHQNVGQHLNTPFVDNSLRGKSERIPGTNIEINPFSDQSQEDLMSVFLNQHKGIGQVDNEFDFDGYSIDNIPVYNRSC* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1248 606 CDD REC_typeB_ARR-like 35 149 - -
Mtr2g1248 606 Gene3D - 207 270 - -
Mtr2g1248 606 MobiDBLite consensus disorder prediction 516 563 - -
Mtr2g1248 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR 429 568 IPR045279 GO:0009736
Mtr2g1248 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 283 IPR045279 GO:0009736
Mtr2g1248 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR 308 428 IPR045279 GO:0009736
Mtr2g1248 606 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Mtr2g1248 606 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Mtr2g1248 606 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Mtr2g1248 606 MobiDBLite consensus disorder prediction 1 23 - -
Mtr2g1248 606 PIRSF RR_ARR_type-B 9 593 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mtr2g1248 606 Gene3D - 33 165 - -
Mtr2g1248 606 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Mtr2g1248 606 MobiDBLite consensus disorder prediction 187 208 - -
Mtr2g1248 606 SMART REC_2 33 145 IPR001789 GO:0000160
Mtr2g1248 606 MobiDBLite consensus disorder prediction 159 176 - -
Mtr2g1248 606 MobiDBLite consensus disorder prediction 159 208 - -
Mtr2g1248 606 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Mtr2g1248 606 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Mtr2g1248 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR 308 428 - -
Mtr2g1248 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR 429 568 - -
Mtr2g1248 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 283 - -
Mtr2g1248 606 MobiDBLite consensus disorder prediction 516 545 - -
Mtr2g1248 606 SUPERFAMILY CheY-like 32 159 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1248 Mtr-Chr2 13500134 13503551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1248 67 601 Response Regulator Gene Family AT3G16857 44.654 2.35e-145 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr2g1248 Response_reg 4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1248 - K14491 mtr:MTR_2g034960 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1248 2 13500134 13503551 Mtr2g1248 2 13500134 13503551 ECH
Mtr4g4423 4 58228643 58232967 Mtr2g1248 2 13500134 13503551 PCT