Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1243 ATGTCGCTCAGACCCAATGCAAGAACAGAGGTTCGTCGCAACCGTTACAAAGTTGCCGTCGATGCCGATGAAGGTCGCCGGAGAAGAGAGGATAACATGGTCGAGATCCGTAAAAGTAAGCGTGAAGAAAGTCTCTTGAAGAAACGTCGTGAAGGTCTTCAAAATCAACCGCAGTTTACTCCTCTTCAATCTTCCTCCATTGTCGAGAAAAAGTTGGAGAGTCTTCCTGCAATGGTTGCTGGTGTTTGGTCAGATGATAATAATCAACAACTTGAAGCAACTACGCAATTTCGGAAGCTTCTTTCCATAGAGCGAAGCCCTCCGATTGAGGAAGTTATTCAATCTGGTGTTGTTCCCCGCTTTGTTCAGTTTCTAGTTCGGGAGGATTTTCCCCAACTTCAGTTTGAGGCTGCTTGGGCTCTTACAAACATAGCATCCGGAACTTCTGAGAATACTAAGGTGGTAATTGATCATGGGGCAGTGCCGATATTTGTGAAGCTACTTAGTTCTCCAAGTGATGATGTTCGGGAGCAGGCTGTGTGGGCATTGGGAAATGTTGCTGGTGATTCACCTAGGTGCCGCGATCTTGTTCTTAGCCATGGTGCCCTGATCCCGCTGTTAACCCAGTTGAATGAGCAGGCAAAGCTTTCAATGCTGAGAAATGCCACATGGACTCTGTCAAACTTTTGCAGGGGCAAGCCACAACCTCCATTTGATCAGGTGAGGCCAGCACTTCCGGCTCTTGAGCGTTTGGTTTTTTCAAATGATGAAGAAGTCCTGACAGATGCATGCTGGGCACTCTCTTATCTTTCTGATGGAACAAATGACAAAATCCAAGCGGTGATTGAGGCAGGTGTATGTGGCAGACTAGTGCAGCTCCTTCTGCACCCATCTCCTTCAGTGCTGATCCCTGCACTTCGCACGGTGGGAAATATTGTTACGGGAGATGATGCACAGACTCAGGCTATTATTGGTCATGGTTCACTCCCATGTCTTTTGAGCCTGTTGACCCATAATCACAAGAAAAGTATTAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAACAAAGAGCAGATACAGGCTGTTATTGAAGCCGGACTGATTGCTCCTCTGGTCAATCTTCTTCAAAATGCCGAATTTGACATTAAAAAAGAAGCTGCATGGGCACTCTCCAATGCTACATCTGGCGGTACCCATGAGCAAATCAAGTACTTGGTGAGCCAGGGTTGCATTAAGCCTCTGTGTGATCTTCTTGTTTGCCCCGATCCAAGAATTGTTACCGTCTGTTTAGAAGGTCTTGAGAATATTCTGAAGATTGGAGAAGCAGAGAAAAGCTTTGGTAACGCGGGAGATGTCAACTTGTATGCTCAGATGATAGATGAGGCGGAGGGATTGGAAAAGATTGAGAACCTGCAGAGTCATGACAACAATGAAATTTACGAGAAGGCTGTTAAAATTCTCGAGACATATTGGTTGGAAGATGAAGACGAGACACTACCACCAGGCGATGGTTCTCAACCTGGTTTTAATTTTGGAGGCAATGACCTTCCGGTCCCATCTGGTGGATTTAACTTCGGTTAA 1593 0.4576 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQNQPQFTPLQSSSIVEKKLESLPAMVAGVWSDDNNQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLTQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDAQTQAIIGHGSLPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWALSNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAEKSFGNAGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPPGDGSQPGFNFGGNDLPVPSGGFNFG* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1243 530 Gene3D - 73 496 IPR011989 -
Mtr2g1243 530 PANTHER IMPORTIN SUBUNIT ALPHA 2 521 - -
Mtr2g1243 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Mtr2g1243 530 Gene3D - 11 50 IPR036975 GO:0006606
Mtr2g1243 530 PANTHER IMPORTIN ALPHA 2 521 - -
Mtr2g1243 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Mtr2g1243 530 Coils Coil 36 56 - -
Mtr2g1243 530 SUPERFAMILY ARM repeat 6 501 IPR016024 -
Mtr2g1243 530 PIRSF Importin_alpha 2 529 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mtr2g1243 530 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Mtr2g1243 530 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Mtr2g1243 530 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Mtr2g1243 530 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Mtr2g1243 530 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Mtr2g1243 530 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Mtr2g1243 530 Pfam Armadillo/beta-catenin-like repeat 316 357 IPR000225 GO:0005515
Mtr2g1243 530 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Mtr2g1243 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Mtr2g1243 530 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Mtr2g1243 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Mtr2g1243 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Mtr2g1243 530 SMART arm_5 402 442 IPR000225 GO:0005515
Mtr2g1243 530 SMART arm_5 233 272 IPR000225 GO:0005515
Mtr2g1243 530 SMART arm_5 359 399 IPR000225 GO:0005515
Mtr2g1243 530 SMART arm_5 274 314 IPR000225 GO:0005515
Mtr2g1243 530 SMART arm_5 105 146 IPR000225 GO:0005515
Mtr2g1243 530 SMART arm_5 316 357 IPR000225 GO:0005515
Mtr2g1243 530 SMART arm_5 189 231 IPR000225 GO:0005515
Mtr2g1243 530 SMART arm_5 148 188 IPR000225 GO:0005515
Mtr2g1243 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Mtr2g1243 530 Pfam Atypical Arm repeat 457 503 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1243 Mtr-Chr2 13472371 13476567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1243 131 394 U-box Gene Family AT3G46510 25.660 6.10e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1243 K15042 - gmx:100808498 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1243 2 13472371 13476567 Mtr2g1243 2 13472371 13476567 ECH
Mtr2g1243 2 13472371 13476567 Mtr1g3000 1 41164358 41169627 ECH
Mtr2g1243 2 13472371 13476567 Mtr7g3615 7 53154077 53158582 ECH
Mtr4g4429 4 58312412 58316540 Mtr2g1243 2 13472371 13476567 PCT