Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1172 ATGGAAGTGGAAGGAAGTGTAATAAGCAACTCAAACAGCACCATGCTCCAAAGTGATGATGAGTTGGATCTTCGACGAGGGCCATGGACCGTCGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCATGGTGAAGGTCGATGGAATACTCTTGCTCGTTCCGCTGGACTCAAGCGAACTGGCAAGAGTTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGTCGTGGCAACATCACACTTGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCTAAAATTGCTCAATACTTACCGGGAAGAACAGACAACGAGATCAAGAATTATTGGAGAACCCGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTAAACAGCAAGCAATTTAAAGATGCTATGCGATACCTTTGGATGCCAAGGCTAGTGGAGCGCATCCAAGCTGCCGCATCCACCTCCGCCACCCTAGCCACCGCCACTAATAATGGTTTACCAAGTGGTACAACGACGGTCACCACCAACAATACACCATACAACATAAACAACAATTTTGATGTCCATAGTGACGCGAACATGTTAACTCCAACAATTATGAACACCAACAGTTTATGTGGTTCACATGTTGCACAAAGTTATACCCCGGAAAATAGTAGCAATGGCGCCGCAGCAGCATCATCGGATTCATTTGGGACACAAGTTTCGCCTATCTCGGAATTGACTCAAGATTACTACAATGTCCCAGTTGGTAGTAACAACAATAATAACCCTAATTCTGATTATTACCAACAAGCTCAACAATTTGGGTTTTTTGATTGCATAACTAGCCCATCTGGATTGTTCCCTCAAATGGATTTCAATTCCATGGAACCAAACACTCCTTGGATTCAAGGGGACACATCTGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACATCCCAATGACAACATGTGA 990 0.4283 MEVEGSVISNSNSTMLQSDDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAASTSATLATATNNGLPSGTTTVTTNNTPYNINNNFDVHSDANMLTPTIMNTNSLCGSHVAQSYTPENSSNGAAAASSDSFGTQVSPISELTQDYYNVPVGSNNNNNPNSDYYQQAQQFGFFDCITSPSGLFPQMDFNSMEPNTPWIQGDTSDNFWNVENMLLFQHPNDNM* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1172 329 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 325 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mtr2g1172 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 73 IPR017930 -
Mtr2g1172 329 CDD SANT 28 73 IPR001005 -
Mtr2g1172 329 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Mtr2g1172 329 PANTHER MYB TRANSCRIPTION FACTOR 10 325 - -
Mtr2g1172 329 SMART sant 25 75 IPR001005 -
Mtr2g1172 329 SMART sant 78 126 IPR001005 -
Mtr2g1172 329 CDD SANT 99 122 IPR001005 -
Mtr2g1172 329 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Mtr2g1172 329 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Mtr2g1172 329 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Mtr2g1172 329 Gene3D - 23 79 - -
Mtr2g1172 329 Gene3D - 83 146 - -
Mtr2g1172 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Mtr2g1172 329 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1172 Mtr-Chr2 12630934 12633230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1172 22 165 MYB Transcription Factor Family AT1G48000 77.778 1.10e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr2g1172 Myb_DNA-binding 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1172 K09422 - gmx:100805341 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1172 2 12630934 12633230 Mtr2g1172 2 12630934 12633230 ECH