Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1159 ATGGCTACAACAGAGGCAGCTGGTCCTAGATATGCACCTGATGATCCTACGTTACCGACGCCGTGGAAAGGTTTGATTGATGGAAGTACTGGTTTGTTGTATTATTGGAATCCTGAAACTAATGTTACTCAATATGAAAAGCCGGGGCCGGTGAATCCGCCAGCTCCTGCGGCTTCTACGCCGAGCTTGGCGCCTATACCTGTTGCTCATTCGATGACAGCTGGTGGGGTGGGGCAACAACAGCATGGGCAACAGATGATGCAAGTGCAGCAGCTTTCACAACAACAGCAGGGCGGTCATTATGGTCAAGGGATGCCGCAGCAGCAAAGTCCTCATATGGTGCAGGCGGCTCAGCAGCAGTCTTCTCAGACTGCTCAGCCTGTGCAGCCACAACCGGCGCAACAACCTGGGTTACACCAAAGTAGACCACAGATGATGCAGCCTCAAGGGCAGCCGATGATGCAGTATCAAGGACAGCAGCAATATCAGCAAATGCATCATCAGATGCCTCCACAGGCGATTCCTCGTCCACAACAATTTGGACAGGGGAATTCTCAGGATCACGGTTCGCAGCTTGTGCAACCGCAAGCGCCGCAATTTACTCCTCAGAATATGCATTATATGGGATATCAACAAAACATGATTTCGCCTAGGCAACCTAACTCACAGCAGATTCAGCCGAACATGCACCCATCTGGGCAACCGAACCCCCAGCAGAATCAGCATAATATACATAACCAGCCCTTTGAAAATCAACATGATTTTAAACCTGCAATGCCGAAGATGGAGGAAGCAGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCACCGTCACAGTATCCACAAAGGAGTGGCTTGCCTGTTCAAAACAACCAAAACATTCCTGCTGAAGTTAGTTCCGGTCAGGTGCCTAATGCAGGTGTTAATGCTGGCCAGCCACAACAATTCAGGGGCTTTTCAGGCGGCATGCAACAGTCTACCCCGACAATGCAGTCACAGCAGGGTGGTTCTGATTTATTTTACCAACATGGTCCTAACTTTCAGAACCAGATGAGTCCAGGAATGATGCATGGTCATACATCCAATGCGCATCCTGTTGCACAAAAGATGGGACACGAGGACAATTTACATGGTAGAGGTGGAAATGACTATTATTATAATTCTAATAAAGAGATGCCACCAATGGGTCGTCAGCAGCCAGATATGACCCAAATGCCGATTCCCAGAAATCCGCAGGATATGAGGATTGGCAATTCCCCTTTTCAAAATAATGTCCCCAGTGGAAATGGAAGTGGTATTACTGGGAATGCTATGAGCAACATGTTCACTCCTCCGATAGGAGGACCTTCTGCTCTTTCAAGTAACTCTTTTACGAGGCCTCCGTATGGTGGATCTTCAGATGTTACTGATCTCTCAGCAGCTGAATTATACTGTCAGCAACATGAAGTTACAGCATCGGGTGACAACATTCCACCCCCATTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTTTGTTCAGCGGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTATTGCCCTACAAGGTAGAGACATAGTGGCAATTGCCAAAACAGGCTCTGGAAAAACACTAGGCTACTTAATGCCGGCCTTCATTCTTCTTAGGCAGCGACGCAATAATTCTCTGAATGGACCCACCGTTTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGGGGGGCAGACATTGTTGTTGCCACACCTGGCAGGCTCAATGATATACTTGAAATGAAAAAAATTGACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGGATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTATACTGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCAGGCGATCTTCTTGTAAATCCTGTTCAAGTTAACATTGGAAATGTAGATGAGCTTGCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGGCGTCTAGAGCAGATCCTCAGATCCCAGGAACGGGGTTCTAAGATCATAATATTTTGTTCCACAAAGAAGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGAACTTTTGGGGCTGCTGCAATTCACGGTGATAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAATTCCGGACTGGGAAGTCTCCAATTTTGGTTGCCACCGATGTTGCTGCTCGTGGTCTTGATATTAAAGACATAAGGGTGGTGATCAACTATGATTTCCCCAATGGTGTTGAGGACTATGTACACCGAATTGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTGGCATATACCTTTTTCTCTGAGCAGGATTGGAAACATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCACGTGCTTCCAGAGTTAAGGCAAATTGCTTCACGTGGGCCACCAAGCTTTGGAAAGGATAGGGGCGGGATGAATCGCTTTGACTCTGGTGGTGGCGGCGGTGGCGGTGGGCGCTGGGAAACTGGTGGTCGTGGCGGCATGAGGGACAGTGGTTTTGGTGGTCGTGGCGGCATGAGGGACGGTGGTGGTATGAGGGATGGTGGGGGTTTTGGTGGACGTGGTGGCATGAGGGATGGTGGTGGCTTTGGTGGTCGTGGAGGCATGAGGGATGGTGGCTTTGGTGGTCGCGGTGGAATGAGGGATGGAGTTGGTGGAAGTGGAGGGAGGGGTGATTTCTTTCCTGGTAGGGGCAACAGAGGTAGAGGATTTGATGCTCCGCGTGGGGGCAATGTTGGTTGGGGTAGGGGTGACCGCGGTGGTCCAGGTGATAGGTATAATATGGATGGTCGTGGACAAGGGCGTGGACGTGGAAGATTTGACAACAGAAGAGATGTTCAGAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCTGATAGAGTTCGAACATGGGATATCAACAGAAGCAGCAGCAGAAGTAGAAGTAGAAGTAGGAGTAGGAGCTGGAGCAGGGGTCGCAGTAGAAGTCGCAGCTGGTCTCGTGGTCGCAGCTATAGCCGTAGTCGTAGTCCACGCAGTCGTAGCCGTGGTCGCAGTTATAGCCGAAGCCGCAGCCCCAAGAAAACTAGGCGTGTTAAGTCGAAATTTTCTGATACAAATGATGTTGTGCCACCTGAAGCAGGAGCTTCCGATCCTAAAATGTTCCCTATACCTGCCAACACCCAAGGGAATTCTGTTACGGGAACAGAACATGTGGAACAGCTACCTGTTGTTGGGGGCACAGGCTCAACTAACCCAGAGGCTGTAGTGGATGTTAGTCATCAACCAGCTTCTGATATTTGA 3528 0.4861 MATTEAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPGPVNPPAPAASTPSLAPIPVAHSMTAGGVGQQQHGQQMMQVQQLSQQQQGGHYGQGMPQQQSPHMVQAAQQQSSQTAQPVQPQPAQQPGLHQSRPQMMQPQGQPMMQYQGQQQYQQMHHQMPPQAIPRPQQFGQGNSQDHGSQLVQPQAPQFTPQNMHYMGYQQNMISPRQPNSQQIQPNMHPSGQPNPQQNQHNIHNQPFENQHDFKPAMPKMEEAEFKNGSQVGFSPSQYPQRSGLPVQNNQNIPAEVSSGQVPNAGVNAGQPQQFRGFSGGMQQSTPTMQSQQGGSDLFYQHGPNFQNQMSPGMMHGHTSNAHPVAQKMGHEDNLHGRGGNDYYYNSNKEMPPMGRQQPDMTQMPIPRNPQDMRIGNSPFQNNVPSGNGSGITGNAMSNMFTPPIGGPSALSSNSFTRPPYGGSSDVTDLSAAELYCQQHEVTASGDNIPPPFMTFDSTGFPPEILQEVCSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMNRFDSGGGGGGGGRWETGGRGGMRDSGFGGRGGMRDGGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGGFGGRGGMRDGVGGSGGRGDFFPGRGNRGRGFDAPRGGNVGWGRGDRGGPGDRYNMDGRGQGRGRGRFDNRRDVQRSRDRSYSRSPDRVRTWDINRSSSRSRSRSRSRSWSRGRSRSRSWSRGRSYSRSRSPRSRSRGRSYSRSRSPKKTRRVKSKFSDTNDVVPPEAGASDPKMFPIPANTQGNSVTGTEHVEQLPVVGGTGSTNPEAVVDVSHQPASDI* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1159 1175 ProSitePatterns WW/rsp5/WWP domain signature. 22 48 IPR001202 GO:0005515
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 322 365 - -
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 1055 1106 - -
Mtr2g1159 1175 SUPERFAMILY WW domain 10 49 IPR036020 GO:0005515
Mtr2g1159 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 849 IPR027417 -
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 74 168 - -
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 322 357 - -
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 175 194 - -
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 217 254 - -
Mtr2g1159 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 729 873 IPR001650 -
Mtr2g1159 1175 Pfam WW domain 18 48 IPR001202 GO:0005515
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 1 21 - -
Mtr2g1159 1175 Pfam Helicase conserved C-terminal domain 726 834 IPR001650 -
Mtr2g1159 1175 ProSiteProfiles WW/rsp5/WWP domain profile. 16 50 IPR001202 GO:0005515
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 1132 1146 - -
Mtr2g1159 1175 Gene3D - 705 875 IPR027417 -
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 1004 1054 - -
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 873 1175 - -
Mtr2g1159 1175 SMART ww_5 17 50 IPR001202 GO:0005515
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 371 390 - -
Mtr2g1159 1175 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 495 523 IPR014014 GO:0003724
Mtr2g1159 1175 SMART ultradead3 514 717 IPR014001 -
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 217 250 - -
Mtr2g1159 1175 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 646 654 IPR000629 -
Mtr2g1159 1175 Pfam DEAD/DEAH box helicase 519 689 IPR011545 GO:0003676|GO:0005524
Mtr2g1159 1175 CDD WW 19 48 IPR001202 GO:0005515
Mtr2g1159 1175 Gene3D - 470 704 IPR027417 -
Mtr2g1159 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 526 700 IPR014001 -
Mtr2g1159 1175 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 286 977 - -
Mtr2g1159 1175 CDD SF2_C_DEAD 714 843 - -
Mtr2g1159 1175 MobiDBLite consensus disorder prediction 45 194 - -
Mtr2g1159 1175 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 286 977 - -
Mtr2g1159 1175 SMART helicmild6 754 834 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1159 Mtr-Chr2 12361805 12369376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1159 493 854 Eukaryotic Initiation Factors Gene Family AT3G19760 33.884 1.48e-62 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1159 K12823 - gmx:100807830 1330.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1159 2 12361805 12369376 Mtr2g1159 2 12361805 12369376 ECH