Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1144 ATGGGTGTTCCTAAGCAAAAATGGTCAGAAGAAGAGGAATCCGCACTTAAAGCTGGAGTTATCAAGCATGGGGTGGGTAAATGGCGTACGATCCTCAAGGATCCTGAATTTAACCATGTTTTATACCTTCGGTCAAATGTTGATCTAAAGGATAAATGGCGAAATTTGAGCGTGATGGCAAGTGGATGGGCTTCGAGGGAGAAGCCAAAGGGAGCAATGAAAAGGGTGCATTATCAGGCACCAAGACATGAGGACAACTCTATGGCTGTCACTCCTTTTTTTCTAAGCGATGATGAAATTGTTGATGTTCAGCCTCTTCAAGTTTCAAGAGATATGCTGCAAATTTCTGGCCCAAAAAGCTCTAGTATAAGGTTGGATAACCTTATAATGGAAGCTATATCTAGCTTGAATGAACTTGGTGGTTCTAATAAAACAACCATTGCTTCATTCATTGAGGACCATTACTGGGCACCGGCTGACTTCAAAAAGCTGCTGTCAGCAAAACTGAAATATCTTACATCTCGTGGAAAACTGATCAAGGTGAAGCGCAGGTATAGGATTGCACCTACTCCAGCATATTCAGACAGAGGAAGACACCCATCAACATTGTTATTGGAAGGGAGGCAAAAAGGCTCTATGAAATTTTACAGGGATGAGAGCAATATCCCTACTAAGTCTGAGATCGATTTAGAATTAGAAAAAATAAGGTCCATGTCTGCACAAGAGGCAGCCGCATATGCTGCTCGAGCAGTTGCTGAAGCGGAAGCCCTCATGGCGGAGGCTGAAGAGGCAACAAAGGAGGCAGAGGCTGCAGAAGCGGAGGCAGATGCAATGGAAGCTTTTGTAGAAGCTGAAAGGAAAAGGCTGAAGGAGAAAAACACCCAAAGACGATGA 894 0.4385 MGVPKQKWSEEEESALKAGVIKHGVGKWRTILKDPEFNHVLYLRSNVDLKDKWRNLSVMASGWASREKPKGAMKRVHYQAPRHEDNSMAVTPFFLSDDEIVDVQPLQVSRDMLQISGPKSSSIRLDNLIMEAISSLNELGGSNKTTIASFIEDHYWAPADFKKLLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRHPSTLLLEGRQKGSMKFYRDESNIPTKSEIDLELEKIRSMSAQEAAAYAARAVAEAEALMAEAEEATKEAEAAEAEADAMEAFVEAERKRLKEKNTQRR* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1144 297 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mtr2g1144 297 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr2g1144 297 SUPERFAMILY "Winged helix" DNA-binding domain 119 197 IPR036390 -
Mtr2g1144 297 SMART sant 4 59 IPR001005 -
Mtr2g1144 297 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Mtr2g1144 297 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Mtr2g1144 297 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr2g1144 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Mtr2g1144 297 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr2g1144 297 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 295 - -
Mtr2g1144 297 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Mtr2g1144 297 Coils Coil 244 288 - -
Mtr2g1144 297 Gene3D - 8 82 - -
Mtr2g1144 297 Gene3D - 118 196 IPR036388 -
Mtr2g1144 297 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1144 Mtr-Chr2 12162631 12167685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1144 1 241 Single Myb Histone (SMH) Gene Family AT1G49950 57.490 2.43e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr2g1144 Linker_histone 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1144 K09422 - gmx:100780698 348.977