Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1098 ATGGACTTATCTTTGGGATTAGCGCCAACAAAGAATAAGAGCTCAAACGAAGAACAAGGAGCCTTCCCTCGTCACTCTCCTGCTCAAAGATTGAGACTCGAAGAAATATTTCAAACGATCAAATATCCAACTAATAAGCAAAAAAGTGAAATAGCCGAAGAGCTTGGTCTTCAGCCAAAACAAGTGAACTGGTGGTTTACATACAAAAGAGGTCTGGTTAAGAATGCTACTCAAAAGGAAGTTAACGCTGCTTTTCGAGCTGAAATTCAAATGCTTTTGGAAGAGAAAAGGGAAATGGAGAGACAAAATAGAGTATCTTGCCAAGCATGCCGTGATTCACGTTTGAAACAACTTCGGCTTGAAAATGAACTTCTGAAAGAAAAGGTTTCTTGGATTGAGCATGTGGAGGTGGATTTGAAGATTCAAACACATAGTATGTATAGAGATATTGTCAACAATGCTATTGCATTTGGAGCCGAAAGATGGCTTATGGAACTTCGAAGAATTGGTGAAAGATGTGGTAGTGCAGCACTTGAATACATGCATTTTTATGACAATGGAGTGATTACTTTACCAGAAGGAAGGAGATGTGTAATGAAACTTGCACATCAGGTGCTTAAGGAGTTCAGTAAAAATTTAACAATGTCAAGCAAATCAGATTTACCACAATACATTGCTGATACCGATGATAGCGGGGTTAGGTTTTCGATTCCAAAAAATAGAAACTTATTTCTGTCAAATGATCCATTCATTGTTATTGTTGCTAGCTCCGTTTCCTTACCTCTCCCATCTCATACTGTTTTCGACTTCTTAAGAGATCCTGCAAGACGTTTTGAGTGGGATAAGTTTTGTGACGGAAATCCATGGCATGAAATTGCACACATCTCTACTGGAACTCATCCCAACCACTATGTATCAATTATTCAGCCTCTAGTTTCACCTCCCAAAGATGGTGTGAAGATTATTCAAGAATGTTTCATAGACCCTTTGGGATCCTATGTTGTTTATTCTCCTCTAAACACACAAGAGTTGAATATGGCAATAAATGGCCATGATTTATCAAATGTGTCACTTATAATTCCATCAGGCTTTCTCATCTCTGAAGATAGTAAATCTCTTTCAAAAGATAGTAAATCAAGAGGTTCATTGCTGACAGTGGCTTTTCAAATGCACATGCCTGCTCCTCTTATTACAAATTTTGAATCTGCAGCTGATGCTTCAAATGCACTCATGACAACAGTAGTTCAAAGCATAAAACATGCTCTACTAAGTGGTTCTGAATTGAAGTGA 1290 0.3798 MDLSLGLAPTKNKSSNEEQGAFPRHSPAQRLRLEEIFQTIKYPTNKQKSEIAEELGLQPKQVNWWFTYKRGLVKNATQKEVNAAFRAEIQMLLEEKREMERQNRVSCQACRDSRLKQLRLENELLKEKVSWIEHVEVDLKIQTHSMYRDIVNNAIAFGAERWLMELRRIGERCGSAALEYMHFYDNGVITLPEGRRCVMKLAHQVLKEFSKNLTMSSKSDLPQYIADTDDSGVRFSIPKNRNLFLSNDPFIVIVASSVSLPLPSHTVFDFLRDPARRFEWDKFCDGNPWHEIAHISTGTHPNHYVSIIQPLVSPPKDGVKIIQECFIDPLGSYVVYSPLNTQELNMAINGHDLSNVSLIIPSGFLISEDSKSLSKDSKSRGSLLTVAFQMHMPAPLITNFESAADASNALMTTVVQSIKHALLSGSELK* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1098 429 Pfam Homeodomain 25 70 IPR001356 GO:0003677
Mtr2g1098 429 SUPERFAMILY Bet v1-like 191 396 - -
Mtr2g1098 429 SUPERFAMILY Homeodomain-like 14 76 IPR009057 -
Mtr2g1098 429 MobiDBLite consensus disorder prediction 1 25 - -
Mtr2g1098 429 Gene3D - 25 71 - -
Mtr2g1098 429 SMART HOX_1 18 80 IPR001356 GO:0003677
Mtr2g1098 429 CDD homeodomain 24 66 IPR001356 GO:0003677
Mtr2g1098 429 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 128 IPR042160 -
Mtr2g1098 429 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 128 422 IPR042160 -
Mtr2g1098 429 Coils Coil 82 102 - -
Mtr2g1098 429 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Mtr2g1098 429 MobiDBLite consensus disorder prediction 8 22 - -
Mtr2g1098 429 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 128 422 - -
Mtr2g1098 429 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 13 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1098 Mtr-Chr2 11669824 11677246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1098 128 422 Homeobox Transcription Factor Family AT5G17320 36.634 5.26e-50 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mtr2g1098 Homeodomain 7.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1098 K09338 - mtr:MTR_2g030690 560.836