Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1097 ATGGATGGTAGTGTACATGGTTATAAAGATATTAAAAAGGTGTTGGCTTTGACGACTGTGGGAAGGTTTTCTCATGGGAGTGTTGGTGGTAGGTGGCAGTGGAACCCAGACATCCAAGGGGCTTACACTATGAGCGGTGTCTATCACATTATGACTACTCCGAACGACCCACCAATGGGTGGTTTGAATGATCTTGTTTGGCATAAGCATGTTCCAATGAAGGTGTCCATTCTTGCTTGGCGGTTGTTGCGGGATAGGTTACCGACCAAGTCTAATCTTGTCAGAAGAGGTATCATTAATGCTGAGAGTGCTGGGTGTGTTGCTGGTTGCGGTAATGACGAATCATCGACGCATTTGTTCCTTCACTGTGCCGGATTCACCCCTTTATGGTGGCACATAAGAATATTCAAAACGCTTACACATCCAGATGATAACCAAAAGTATGAAATAGCCCAACAGCTTGAGCTTGAGCCACAACAGGTGAAATGGTGGTTTCAAAACAAAAGAGCACATATTAAGAACAAAAATTTAAAACCAGCGAACGATGCTCTCCGTGCTGAAAATGAAAGGATTTTGAAAGAGAACATGGAAATGAAGGAGAGACTGAAGAATTTATTGTGCCAATCATCATGCAATGGTTCTAATAGTTTGAAACAACTTCAGGTTGAAAATGCTCGTCTCAAAGAAAGGTATGAGATGATGCAAAAAAAGGAAGTATCATTAGAACTAAAGTTAGGTCTTCCTAAAAGCTCGACACGTGGAAGCACCTCCTTGAATCTAGATAGAGGTTCAAGTTCAAAAAGTTCTTTAGAAATACAAAATCCAATGATGTTGGTGGCTGGACTTGCCGCCACGGAAGAGTTGCTTAAGCTTTTCCGCGATGAGTCCTTATGGGTTAAGTCTCAGCTTAATCGAAGACTTGTTCTTGAAAAAAACTATGAAGACGTCTTCCCTAGAGTTGACCACTTTAATGGCGCCAAAACACATGTTGAATCATCAAAAGATTCACAAATGTTGAAAATTGGAGCAACACATTTGGTCGAGATGTTTCTGGATTCGGAAAAATGGGCAAATCTTTTCCCAACTATTGTCAACAAAGCAGAGACCATCAAAGTGCTTGAAAGAGACTCCTCACAAAATCAAAGTGGAGCTTTGTTGTTGATGCATGGAGAGATGCATGTTCTTTCACCTTTAGTGAAACCAAGACAATTTTACTTCCTTCGCTATTGTGTACAAGTTGAAGCTGGTATCTGGGTGATTGCTGATGTCTCTTATGATTACTTGAAAGAGGATGGACCTCATTCTTCCTTTTGGAGGTTTCCTTCTGGATGTATGATTCAACAAATATCTAATGAGACTTCCAAGGTTTCTTGGATTGAGCATGTAGAAGTGGATTTGAAGATTCAAACACATAGTATGTATAGAGATATTGTCAACAATGCTATTGCATTTGGAGCCGAAAGATGGCTTATGGAACTTCGAAGAATTGGTGAAAGATGTGGTAGTGCAGCACTTGAATACATGCATTTTTATGACAATGGAGTGATTACTTTACCAGAAGGAAAGAGATGTGTAATGAAACTTGCACATCAGGTGCTTAAGGAGTTCAGTAAAAATTTAACAATGTCAAGCAAATCAGATTTACCACAATACATTGCTGATACTGATGATAGCGGGGTTAGGTTTTCGATTCGAAAAAATAGAAACTTATTTCTGTCAAATGATCCATTCATTGTTATTGTTGCTAGCTCCGTTTCGTTACCTCTCCCATCTCATACTGTTTTCGACTTCTTAAGAGATCCTGCAAGACGTTTTGAGTGGGATAAGTTTTGTGACGGAAATCCATGGCATGAAATTGCACACATCTCTACTGGAACTCATCCCAACCACTATGTATCAATTATTCAGCCTCTAGTTTCACCTCCCAAAGATGGTGTGAAGATTATTCAAGAATGTTTCATAGACCCTTTGGGATCCTATGTTGTTTATTCTCCTCTAAACACACAAGAGTTGAATATGGCAATAAATGGCCATGATTTATCAAATGTGTCACTTATAATTCCATCAGGCTTTCTCATCTCTGAAGATAGTAAATCTCTTTCAAAAGATAGTAAATCAAGAGGTTCATTGCTGACAGTGGCTTTTCAAATGCACATGCCTGCTCCTCTTATTACAAATTTTGAATCTGCAGCTGATGCTTCAAATGCACTCATGACAACAGTAGTTCAAAGCATAAAACATGCTCTACTAAGTGGTTCTGAATTGAAGTGA 2271 0.3928 MDGSVHGYKDIKKVLALTTVGRFSHGSVGGRWQWNPDIQGAYTMSGVYHIMTTPNDPPMGGLNDLVWHKHVPMKVSILAWRLLRDRLPTKSNLVRRGIINAESAGCVAGCGNDESSTHLFLHCAGFTPLWWHIRIFKTLTHPDDNQKYEIAQQLELEPQQVKWWFQNKRAHIKNKNLKPANDALRAENERILKENMEMKERLKNLLCQSSCNGSNSLKQLQVENARLKERYEMMQKKEVSLELKLGLPKSSTRGSTSLNLDRGSSSKSSLEIQNPMMLVAGLAATEELLKLFRDESLWVKSQLNRRLVLEKNYEDVFPRVDHFNGAKTHVESSKDSQMLKIGATHLVEMFLDSEKWANLFPTIVNKAETIKVLERDSSQNQSGALLLMHGEMHVLSPLVKPRQFYFLRYCVQVEAGIWVIADVSYDYLKEDGPHSSFWRFPSGCMIQQISNETSKVSWIEHVEVDLKIQTHSMYRDIVNNAIAFGAERWLMELRRIGERCGSAALEYMHFYDNGVITLPEGKRCVMKLAHQVLKEFSKNLTMSSKSDLPQYIADTDDSGVRFSIRKNRNLFLSNDPFIVIVASSVSLPLPSHTVFDFLRDPARRFEWDKFCDGNPWHEIAHISTGTHPNHYVSIIQPLVSPPKDGVKIIQECFIDPLGSYVVYSPLNTQELNMAINGHDLSNVSLIIPSGFLISEDSKSLSKDSKSRGSLLTVAFQMHMPAPLITNFESAADASNALMTTVVQSIKHALLSGSELK* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1097 756 Coils Coil 181 208 - -
Mtr2g1097 756 Pfam START domain 282 498 IPR002913 GO:0008289
Mtr2g1097 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 134 749 IPR042160 -
Mtr2g1097 756 Gene3D - 133 179 - -
Mtr2g1097 756 SUPERFAMILY Homeodomain-like 134 178 IPR009057 -
Mtr2g1097 756 Coils Coil 217 244 - -
Mtr2g1097 756 SUPERFAMILY Bet v1-like 518 723 - -
Mtr2g1097 756 ProSiteProfiles START domain profile. 269 502 IPR002913 GO:0008289
Mtr2g1097 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 134 749 - -
Mtr2g1097 756 SUPERFAMILY Bet v1-like 281 500 - -
Mtr2g1097 756 Gene3D - 281 496 IPR023393 -
Mtr2g1097 756 SMART HOX_1 127 179 IPR001356 GO:0003677
Mtr2g1097 756 SMART START_1 278 499 IPR002913 GO:0008289
Mtr2g1097 756 CDD homeodomain 134 176 IPR001356 GO:0003677
Mtr2g1097 756 Pfam zinc-binding in reverse transcriptase 42 130 IPR026960 -
Mtr2g1097 756 CDD START_ArGLABRA2_like 278 495 - -
Mtr2g1097 756 Pfam Homeodomain 135 173 IPR001356 GO:0003677
Mtr2g1097 756 ProSiteProfiles 'Homeobox' domain profile. 136 175 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1097 Mtr-Chr2 11652842 11664664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1097 136 749 Homeobox Transcription Factor Family AT1G73360 34.519 1.77e-116 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr2g1097 START 8.4e-28 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1097 K09338 - mtr:MTR_2g030690 556.214