Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1092 ATGGATTACTCAATAGGAGGTGGCAGTGAGTCCGGTGAAGAAGTCAATGGCAACTTTCGAGATGATGGAGAAAAATCTTCCCACAAACGTCTTACCTCCGCTCAAACATCCATACTTAAAAATTTCATGAAGGAATGCCACCATCCAGACGAGGCAGAACGACATCAATTGGCTGTGGAAGTTGGGCTTGAGCCAAAACAAATCAAGTTTTGGTTTCAGAATAAGAGAACTCTGTTGAAGCATCAACATGAGCGAGAAACAAACGGTACTCTTCGTCGGGAGAATGACAAGATTCGTAACGAAAACCTCAAAATAAAAGAGTGTGAGAAAATGTCTAGCCTTCTTGCAAGTTACATGGAGAAAAAGATATCACGACCGGAGTTTGAGCAAGCTCTTAAGTCTATAAAATCATTTTCAAGAGACTATGAATGCTCAAGTCATGTGCATGGTAATCTAGCTACGTGGGGAGGTGTGCTAGGGCAAACCTCAACACAAAACTATGATGCACAAAAGATAACTATGTCACAAGTTGTAGATGCTGCAATGGATGAATTGGTTAGGCTTGTGAGAGTTAATGAGCCTTTTTGGGTCAAATCTCCAAATACTCAAGATGGGTACACTTTTCATCGCGAAAGTTATGAACAAGTTTTTCCCAAGAACAATCACTTTAAAGGTGCGAATGTGTGTGAAGAATCTTCCAAATATTCTGGATTAGTGAAGATTAGTGGCATAGATTTGGTTGGCATGTTTCTTGACTCAGTCAAATGGACAAACTTGTTCCCTACAATTGTTACCAAAGCTGAAACTATCAAAGTGTTTGAAATCGGTTCACCAGGAAGTCGAGATGGAGCTTTATTACTGATGAATGAAGAAATGCATATTTTATCACCTCTAGTGAGGCCTCGTGAATTTAACATCATTCGCTACTGCAAAAAATTTGATGCTGGAGTTTGGGTGATAGCTGATGTCTCATTTGACTCATCTCGACCAAACACTGCACCTCTTTCTCGTGGTTGGAAACATCCCTCTGGATGCATCATTCGTGAAATGCCTCATGGCGGTTGTTTGGTCACTTGGGTTGAACATGTGGAAGTGGAAGATAAGATCCATACACATTACGTGTATAGAGATCTTGTTGGGAACTATAATTTATATGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTGTGAGAGATCTTTAGGCTCTTATGTTGAAGCAATACCTGTTGAAGAAACTATAGGAGTGATCCAAACACTTGAAGGGAGGAATAGTGTGATAAAGCTTGCTCAGAGAATGGTCAAAATGTTTTGTGAAAGTTTAACAATGCCTGGTCAATTGGAATTGAACCATTTAACTCTTGCTAGCATTGGTGGTATTAGAGTCTCTTTTCGCAGCACCACGGACGATGATACAAGCCAGCCAAATGGCACTATTGTTACTGCGGCTACCACCCTTTGGCTCCCTCTGCCTGCTCTGAAAGTTTTTGAATTCCTCAAAGATCCTACAAAGCGATCACAGTGGGATGGTCTTTCTTGTGGAAATCCAATGCATGAAATTGCACACATTTCAAATGGACCTTATCATGGCAATTGCATTTCAATTATCAAGCCATTCATCCCTACTCAAAGGCAAATGATGATTCTACAAGAAAGTTTCACATCTCGTGTAGGATCATACATTATATATGCTCCATCTGACAGACAAACTATGGATGTGGCTTTAAGAGGTGAAGACTCTAAAGAGCTACCAATCCTTCCATATGGTTTTGTTGTCTGTTCAAAGAGCCAACCAAATCTTAACGCACCATTTGGAGCGTCTAACAATATTGAAGATGGCTCGTTGTTAACCTTGGCAGCCCAAATTCTGAGCACTAGTCCACATGAAATTGACCAAGTGCTTAATGTGGAAGATATTACTGATATCAACACACATTTGGCAACTACTATTCTAAATGTGAAGGATGCTCTTATGAGCTCTATTTAA 1989 0.4022 MDYSIGGGSESGEEVNGNFRDDGEKSSHKRLTSAQTSILKNFMKECHHPDEAERHQLAVEVGLEPKQIKFWFQNKRTLLKHQHERETNGTLRRENDKIRNENLKIKECEKMSSLLASYMEKKISRPEFEQALKSIKSFSRDYECSSHVHGNLATWGGVLGQTSTQNYDAQKITMSQVVDAAMDELVRLVRVNEPFWVKSPNTQDGYTFHRESYEQVFPKNNHFKGANVCEESSKYSGLVKISGIDLVGMFLDSVKWTNLFPTIVTKAETIKVFEIGSPGSRDGALLLMNEEMHILSPLVRPREFNIIRYCKKFDAGVWVIADVSFDSSRPNTAPLSRGWKHPSGCIIREMPHGGCLVTWVEHVEVEDKIHTHYVYRDLVGNYNLYGAESWIKELQRMCERSLGSYVEAIPVEETIGVIQTLEGRNSVIKLAQRMVKMFCESLTMPGQLELNHLTLASIGGIRVSFRSTTDDDTSQPNGTIVTAATTLWLPLPALKVFEFLKDPTKRSQWDGLSCGNPMHEIAHISNGPYHGNCISIIKPFIPTQRQMMILQESFTSRVGSYIIYAPSDRQTMDVALRGEDSKELPILPYGFVVCSKSQPNLNAPFGASNNIEDGSLLTLAAQILSTSPHEIDQVLNVEDITDINTHLATTILNVKDALMSSI* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1092 662 SMART START_1 176 400 IPR002913 GO:0008289
Mtr2g1092 662 SMART HOX_1 24 86 IPR001356 GO:0003677
Mtr2g1092 662 Gene3D - 20 85 - -
Mtr2g1092 662 Gene3D - 174 384 IPR023393 -
Mtr2g1092 662 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 659 IPR042160 -
Mtr2g1092 662 SUPERFAMILY Bet v1-like 167 400 - -
Mtr2g1092 662 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 20 659 - -
Mtr2g1092 662 Pfam START domain 178 400 IPR002913 GO:0008289
Mtr2g1092 662 Pfam Homeodomain 28 80 IPR001356 GO:0003677
Mtr2g1092 662 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Mtr2g1092 662 SUPERFAMILY Homeodomain-like 25 88 IPR009057 -
Mtr2g1092 662 Coils Coil 91 111 - -
Mtr2g1092 662 CDD START_ArGLABRA2_like 171 399 - -
Mtr2g1092 662 MobiDBLite consensus disorder prediction 15 29 - -
Mtr2g1092 662 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Mtr2g1092 662 MobiDBLite consensus disorder prediction 1 32 - -
Mtr2g1092 662 SUPERFAMILY Bet v1-like 423 571 - -
Mtr2g1092 662 ProSiteProfiles START domain profile. 167 403 IPR002913 GO:0008289
Mtr2g1092 662 CDD homeodomain 25 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1092 Mtr-Chr2 11618289 11623567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1092 22 658 Homeobox Transcription Factor Family AT1G73360 36.080 2.11e-145 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr2g1092 START 2.1e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1092 K09338 - gmx:100795075 636.721