Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1024 ATGGAAGCCGCCGGCGAGGGTTACGGCGGAAGAGGAACTCAGCAACCGTCCGACGAGGTGAGTCTGCAACCAGAATGGCGACGCCGAACTGCCTCAACAGGAAGAGAGCAAACCCTTACACTCCAACCAGAATGGCGGCGAGGGAAACCAACCGCTTCTCCTTCTCCTTCCGGTACCGGCGATGAAGGTGAAAAGAAAATAGAGGAGCAGAAAAAGGAACTGGAATGGAGAAGCTCAAAGGTGAATGCAAGTAGTGTTTGGGAACCGGAATGGAGACGATCAAGGTCTGATACTAGTGCTACTGCTACCGCATATCCATGGAATCGAAATTATGGTGTGAAGAAAACGGTGGGATCAAGTTCCGGTGGTGTTCATCGAGATAGAAATGTTGAAGAATTGCAGCGAAATGCTCCATCGTCAGATTATTCAGTTCCAAAACTGGAAAGACTGCAGATATCAGACAATTTAGCTTCATCATCTCCGGCACTTGAAAAAGAGGATAAAACTTCACCAATTCGGAGACCTGACAGTGGTGGCACATTAGCGGTTCATACAAGCACACTCCGTGTCAATCATTTCCCTGTTAAGTTCGATCCAAGGAGTATAATATTTCATTATAATGTTGCTGTCAAACCAAAGTTTTCCTCAAAAGTTGGCCAGCCTAAGAAGTTATCTAAAAATGATCTTTCCATGATTAAAGAGAAATTGTTTTCTGATGATCCTGAGAAGTTTCCTTTGGACATGACTGCACATGACGGTGCAAACAATATCTTTAGTGCAGTGCAGTTACCGGAAGAGACCATTACCGTGGAGATCTCTGAAGGAGAGGACGAAAAAATCACTACATATAGTGTTACTATAACACTTCTTAATAAACTCCGACTTCACAAGTTAATGGACTATCTTTGTGGGCATTCATTCTCTCTGCCTCGGGATATTTTGCAAGGGATGGACGTGGTAATAAAAGAGAACCCCGTTAGGCGCACAATTTCTGTGGGAAGATACTTCTATCCCACAAATCCTCCTTTGGTAATGAAGGAACTTCGCCCTGGAATAATCGCAGTCGGGGGGTTTCATCATAGTTTAAAACCAACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTGGTGCCTTTCCGAAAGCAAATGTCAGTCGTGGATTTCTTGCATGAGCGTATTGATAACTTTAACTTGGGTGAATTTGAAAAATTCAGGAAATACGTTGAGGAAGTGCTTATTGGATTGAAAGTTAGTGTGACACACCGTAAATCCCAACAAAAATATATCATTGCAGGATTAACACCTACAGTTACAAGGTATGTCACTTTCCCCATTGACCATACTAAGGGCTGGAAACTTGAAAAGGAAGTCGGTCTTCTTAGCTTTTTTAATGACAAATATGACAAGGACATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGCAACAAGAAGAACTATGTACCGATGGAATTTTGTGTTTTAGCTGAAGGCCAAAGGTATCCCAAGGAGCGTTTAGATGGTATTTCTGCAAAGACATTGACGGCAATGGCTCTAGCTCACCCAAGTGAGCGGCAGGGTGCTATACAGAAGATGGTGCAATCTAGTGATGGACCTTGCGGTGGTGATCTTATTCAGAACTTTGGAATGAGAGTCAGCACGACCATGACAACTATTCTCGGACGTGTAATTGGCCCTCCGGAATTGAAGTTGGGTGATCCAAATGGCAAGAATGTCAAAATAACAGTGGATCTAGATAAATGTCACTGGAACCTTTCTGGAAGATCAATGGTGGAAGGCAAACCAGTTGAGCGTTGGGGCATTCTTGATTTCACCAGTATTGGACCGTATAATAGAAAATTAAGACGAAAGGAATTCGTTGAAAAGCTTATAGGTAAATACAAAAAGTTGGGTATCTATATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTACGAGTCATGACTTGCTATCTGAATTACTTGAAAAAATCAACAACATTTGTAAATATAACCAAGGTCGCTTACAATTTCTTCTCTGCGTGATGGCTAATAAAAGTCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAGTGACACAATGTTGTTTGTCTTATAGTGCTAATCAAGGGGATGACAAATTCTATACTTATCTTGCTCTCAAAATCAATGCCAAGCTCGGAGGCAGTAATGTAGAGCTCAATAACAGGCTCCCTTACTTTGAGGGTGAAGAACATGTTATGTTTATAGGGGCTGATGTCAATCACCCTGGTTCGCGAGACAACAAGAGTCCATCAATTGTTGCTGTGGTTGCAACCATTAACTGGCCTGCTGCAAATCGTTATGCGGCACGTGTTTGCCCACAATTCAATCGTAGTGAGAAAATATTGAACTTTGGGGAGATTTGTGTTGAGCTTGTTAGTTGCTATTGGCAGAAGAATGGAGTCAGGCCTGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGCGAGTTCCAGTTTGACATGGTTCTTAATGAAGAGCTACTTGATTTGAAGAGAGCATTCCAAAGATTAAATTATTTCCCAACGATCACTCTTATTGTTGCACAAAAACGACATCAAACTCGATTTTTTCCAGACAGTTGGAGGGATGGGTCTTCTAGCGGCAATATTTTACCGGGAACGGTTGTTGACACAAAAGTTACTCACCCCTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCCACCCACTATCATGTTTTATGGGATGAGCACAAGTTTACATCTGATGAATTGCAGAAACTTATTTATGAGATGTGCTTCACCTTTGCAAGGTGCACTAAACCTGTGTCTCTAGTCCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCACGAAGCAAAGACTGGGATGCAACCTAAGAAGTCAAGAACATATTTGTCTTCTAAAGATTCATCATCGATTCCACCGACAGCTTCGTTTGAACAGGGATTTTACAGGCTGCATGCTGACCTGGAAAACATTATGTTCTTCATCTAG 3090 0.4191 MEAAGEGYGGRGTQQPSDEVSLQPEWRRRTASTGREQTLTLQPEWRRGKPTASPSPSGTGDEGEKKIEEQKKELEWRSSKVNASSVWEPEWRRSRSDTSATATAYPWNRNYGVKKTVGSSSGGVHRDRNVEELQRNAPSSDYSVPKLERLQISDNLASSSPALEKEDKTSPIRRPDSGGTLAVHTSTLRVNHFPVKFDPRSIIFHYNVAVKPKFSSKVGQPKKLSKNDLSMIKEKLFSDDPEKFPLDMTAHDGANNIFSAVQLPEETITVEISEGEDEKITTYSVTITLLNKLRLHKLMDYLCGHSFSLPRDILQGMDVVIKENPVRRTISVGRYFYPTNPPLVMKELRPGIIAVGGFHHSLKPTSQGLSLCVDYSVVPFRKQMSVVDFLHERIDNFNLGEFEKFRKYVEEVLIGLKVSVTHRKSQQKYIIAGLTPTVTRYVTFPIDHTKGWKLEKEVGLLSFFNDKYDKDIVYKDIPCLDLGKGNKKNYVPMEFCVLAEGQRYPKERLDGISAKTLTAMALAHPSERQGAIQKMVQSSDGPCGGDLIQNFGMRVSTTMTTILGRVIGPPELKLGDPNGKNVKITVDLDKCHWNLSGRSMVEGKPVERWGILDFTSIGPYNRKLRRKEFVEKLIGKYKKLGIYMQEPIWYEESSMKILTSHDLLSELLEKINNICKYNQGRLQFLLCVMANKSPGYKYLKWISETKVGIVTQCCLSYSANQGDDKFYTYLALKINAKLGGSNVELNNRLPYFEGEEHVMFIGADVNHPGSRDNKSPSIVAVVATINWPAANRYAARVCPQFNRSEKILNFGEICVELVSCYWQKNGVRPEKIVVFRDGVSEFQFDMVLNEELLDLKRAFQRLNYFPTITLIVAQKRHQTRFFPDSWRDGSSSGNILPGTVVDTKVTHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEAKTGMQPKKSRTYLSSKDSSSIPPTASFEQGFYRLHADLENIMFFI* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1024 1029 Gene3D - 754 1029 IPR036397 GO:0003676
Mtr2g1024 1029 ProSiteProfiles PAZ domain profile. 384 500 IPR003100 GO:0005515
Mtr2g1024 1029 Pfam PAZ domain 398 514 IPR003100 GO:0005515
Mtr2g1024 1029 Gene3D paz domain 379 504 - -
Mtr2g1024 1029 CDD PAZ_argonaute_like 384 499 - -
Mtr2g1024 1029 MobiDBLite consensus disorder prediction 112 180 - -
Mtr2g1024 1029 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 63 1028 - -
Mtr2g1024 1029 MobiDBLite consensus disorder prediction 61 78 - -
Mtr2g1024 1029 Pfam N-terminal domain of argonaute 187 321 IPR032474 -
Mtr2g1024 1029 SMART DUF1785_2 330 383 IPR014811 -
Mtr2g1024 1029 Pfam Piwi domain 685 979 IPR003165 GO:0003676
Mtr2g1024 1029 Pfam Argonaute linker 1 domain 331 382 IPR014811 -
Mtr2g1024 1029 SUPERFAMILY Ribonuclease H-like 676 983 IPR012337 -
Mtr2g1024 1029 MobiDBLite consensus disorder prediction 1 100 - -
Mtr2g1024 1029 SUPERFAMILY PAZ domain 379 538 IPR036085 GO:0005515
Mtr2g1024 1029 SMART Piwi_a_2 684 982 IPR003165 GO:0003676
Mtr2g1024 1029 ProSiteProfiles Piwi domain profile. 684 983 IPR003165 GO:0003676
Mtr2g1024 1029 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 63 1028 - -
Mtr2g1024 1029 Gene3D - 566 747 - -
Mtr2g1024 1029 CDD Piwi_ago-like 548 981 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1024 Mtr-Chr2 10821104 10826760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1024 188 986 Eukaryotic Initiation Factors Gene Family AT1G48410 34.870 7.90e-143 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1024 K11593 - gmx:100783571 1549.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1024 2 10821104 10826760 Mtr2g1024 2 10821104 10826760 ECH