Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1022 ATGGAGGATCAACCTTTTTTAGATTATAAACCATTTGTTAATGATGAGGAGGAGGAAGAAGAAGATGAGTTTTGCAGTTGCTGTGAAGATGCAGAAGAAAGAGATGATGAAGAAAGAGAAGAAGAACAAGAAGAGTGGAAAGAAACTGAGGAGAAAGTGGTGGAAGGGTTGAAGGAAGAACTTGATGAATTTTCAGTAAGAATGTTCTTTAAGGGATTATCAATTACTGGTGTTGAAAATTCAACTTCAGGGTTTTCTGGAATTGGAGTGTTTATGGAAAGATCATCAAATCTTCCTCCTATAAGGGTGCAGAAAAGGCTTGATTTTTATGCTGAGGAGCCTATGGTTGATTACTTGGCACTCATGGATGGGTTGTTAGAAGCTTTGCAGAACAAGATCCGTAGGGTTTATGCTTTCACAGATTCTGAGTTGTTATTTAAGATAACGGCTGAGAAAAATTTGGACATGCCGCTTTTGATGGCACTGAGAGAAAGGATTTTGGAACATGCCAATAATTTTGAAACTTTTGATCTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCAATGCAGTTGGCCACAGTAGCTATGGGGCTCGTCACTTTTCCAGTAAATGACGAAAAATTGCTCGAGAACTGTTCTATTTGTTGCGACGACAAGCCAGTGCCAATGATGATTACCTTGAAATGTTCACACACATTCTGTTCACATTGCTTGAGGTCCTATGCTGACGGTAAACTACAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCAGGATGCAGATATTGTATCTCTACACCCGAGTGCAAATCTTTTCTTCCATTCATCTCCTTTGAATCTCTCGAGAAAGCCCTTTCAGAAGCAAATATTGCCCAGTCAGAAAGATTTTATTGTCCATTTCCAAATTGTTCTGTTCTCCTTGATCCTTGCGAGTGTTTATCAGCAATGGACGGTTCATCTAGTCAGTCGGACAATTCTTGTATCGAGTGTCCTGTTTGTCAGAGGTTTATCTGCGTGGGCTGTGGTGTTCCTTGGCATTCTTCCATGAGCTGTGAAGAATTTCAGAGTTTGCCGGAAGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTATAATGATTGAGCTTACTCAAGGTTGTTACCACATGACATGCCGGTGCGGTCATGAGTTCTGCTATTCTTGTGGTGCTGAGTACAGGGACGGCCAACAAACATGTCAATGTGCATTCTGGGATGAAGACAGCTTGACAAACTCCCTTCAAGAATCAGAACAATGGTCATGGGAGACTTCTATGATCATGGATGCGTACTCAGATCAAGAACGGTCGCAACTTGCGCTTATACAACGGTTCCTTGATGGAGGTTTTAGTCTCAGTGACCATAATCCCTATCAATCTCCTCCTCCTCAATGTACAGAATCATTTGTGGACCCTTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTATTATGAAGATTACATGCAATAA 1563 0.4139 MEDQPFLDYKPFVNDEEEEEEDEFCSCCEDAEERDDEEREEEQEEWKETEEKVVEGLKEELDEFSVRMFFKGLSITGVENSTSGFSGIGVFMERSSNLPPIRVQKRLDFYAEEPMVDYLALMDGLLEALQNKIRRVYAFTDSELLFKITAEKNLDMPLLMALRERILEHANNFETFDLKLIPSIDLEQPMQLATVAMGLVTFPVNDEKLLENCSICCDDKPVPMMITLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISTPECKSFLPFISFESLEKALSEANIAQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCQRFICVGCGVPWHSSMSCEEFQSLPEEERDASDITLHRLAQNKRWKRCQQCRIMIELTQGCYHMTCRCGHEFCYSCGAEYRDGQQTCQCAFWDEDSLTNSLQESEQWSWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPQCTESFVDPLKDLHQLPWLERFVSVISDNYYEDYMQ* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1022 520 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 19 519 IPR031127 GO:0004842|GO:0016567
Mtr2g1022 520 Gene3D - 350 467 - -
Mtr2g1022 520 SUPERFAMILY RING/U-box 211 289 - -
Mtr2g1022 520 Pfam Reverse transcriptase-like 83 182 IPR002156 GO:0003676|GO:0004523
Mtr2g1022 520 SMART ibrneu5 280 352 IPR002867 -
Mtr2g1022 520 SMART ibrneu5 362 421 IPR002867 -
Mtr2g1022 520 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 19 519 - -
Mtr2g1022 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 294 IPR013083 -
Mtr2g1022 520 Coils Coil 32 67 - -
Mtr2g1022 520 ProSiteProfiles Zinc finger RING-type profile. 213 257 IPR001841 -
Mtr2g1022 520 MobiDBLite consensus disorder prediction 1 51 - -
Mtr2g1022 520 MobiDBLite consensus disorder prediction 13 48 - -
Mtr2g1022 520 Gene3D - 70 199 IPR036397 GO:0003676
Mtr2g1022 520 Pfam IBR domain, a half RING-finger domain 285 352 IPR002867 -
Mtr2g1022 520 Pfam IBR domain, a half RING-finger domain 372 421 IPR002867 -
Mtr2g1022 520 ProSitePatterns Zinc finger RING-type signature. 230 239 IPR017907 -
Mtr2g1022 520 SUPERFAMILY RING/U-box 365 429 - -
Mtr2g1022 520 ProSiteProfiles TRIAD supradomain profile. 209 427 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1022 Mtr-Chr2 10802458 10808523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1022 65 412 C3H Transcription Factor Family AT2G19610 25.967 4.74e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1022 - - mtr:MTR_2g028870 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1022 2 10802458 10808523 Mtr2g1022 2 10802458 10808523 ECH