Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0919 ATGGACCCGGGGAAGCTATTCATTGGAGGGATTTCCTGGGATACAAATGAAGACCGACTCAGACAGTATTTTCAGAACTTTGGAGATGTAGTTGAAGCTGTGATAATGAAGGATCGGACCACGGGACGTGCTCGTGGTTTTGGATTTGTTGTTTTTGCTGATCCTTCTGTTGCCGAACGCGTTGTTATGGAAAAACATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAAGCTGTCCCTAGAGATGATCAGAATGTGTTTACTAGAAGCAACAGCAGCAGTCATGGATCGCCTGCTCCTACTCCTATACGCACAAAAAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGATTTTAAGAATTACTTTGATCAATTCGGAACAATTACTGATGTTGTTGTAATGTATGATCATAACACTCAACGTCCTAGAGGTTTTGGATTCATCACATATGATTCTGAGGAAGCAGTTGAGAAAGTGCTGCACAAAACTTTTCACGAACTTAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTCCCAAAGGACTTATCTCCAAGTCCAAGTAGAGGTCAGCTAGGTGGATTTAGTTACGGTACTATGAGTAGAGTTGGTAGTTTTTCTAATGGTTTTGCTCAGGGATATAATCCAAGCCTGATTGGAGGACATGGACTTAGATTAGACGGTAGATTGAGTCCTGCTAATGTTGGCCGTAGTGGATATTCTCTTTTCAGTCCTAGTTATGGGACAGGACTCAACTTTGAGCCACCATTGAACCAAAATGAAAATGAAAACTTTACTTCTAACTTTATCATGGGCCGTGCATTGAGTTCTCCATACAGTGCAAGTCCGAGCAGGTACAATAATGCCATGGCATATGCTGCTGGTTCAAATGTTGGCAACAGTTCAGCCATAAGTTCAACAAATCAGAGTTTGTGGGGTAATGGAAATCTTAATTATGCTAATAACCCTGCAAGCTCTGATGCTTTCTTAGGTTACGGAAGTGAAAATTCAAGTATTGGTTCATTTGGCAATATTGGATCGCTTTGGAGTACCTCTGTTGGTGCTGCTAATCAAGCTGGAACTATTGGCTCTGGTTATGGTAAAAGCAGTCTTAATTATAGGCTTGGAGATGTGATTTTAGGGTCAAAAGCGGTAGGTTATGGAAAAAACAGTGAAAGCAATGTTGAATCAGATTCATCGTACGCTTTCTCAAATGGCAGTTATGGCGAGGCATATAAAAGTACCTTTGAAGCTGGGCCATTTTATCAAGACCATACTTGGAGACCAACAACTTCAGAACTAGAGGATTCTGGTCCTCTTAGTTTTGGCCTTGAAAATGCCGTTTCAGATTTAATGCGCAAAAGCTCTAGTAGTGGTCACATTGGGGCTTATGCTGCTGTTGCTAATAGACAATCAAACAGAGGAATTGCTGCTTAG 1446 0.4115 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRSGYSLFSPSYGTGLNFEPPLNQNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSNVGNSSAISSTNQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGAANQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKSTFEAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNRGIAA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0919 481 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 481 - -
Mtr2g0919 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 481 - -
Mtr2g0919 481 SUPERFAMILY RNA-binding domain, RBD 3 97 IPR035979 GO:0003676
Mtr2g0919 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Mtr2g0919 481 SUPERFAMILY RNA-binding domain, RBD 98 208 IPR035979 GO:0003676
Mtr2g0919 481 Gene3D - 3 86 IPR012677 -
Mtr2g0919 481 SMART rrm1_1 107 179 IPR000504 GO:0003723
Mtr2g0919 481 SMART rrm1_1 5 76 IPR000504 GO:0003723
Mtr2g0919 481 CDD RRM1_hnRNPA_hnRNPD_like 6 76 - -
Mtr2g0919 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Mtr2g0919 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Mtr2g0919 481 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Mtr2g0919 481 Gene3D - 103 191 IPR012677 -
Mtr2g0919 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0919 Mtr-Chr2 9515618 9519726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0919 6 176 Eukaryotic Initiation Factors Gene Family AT2G36660 22.543 8.53e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0919 K14411 - pvy:116115801 606.675