Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0917 ATGGTTTCTCTAGAAGATTCTCGTTCCAATTCAAATCGTTTTCCATTACCAAAAACCTATCAATATCATTCATCTATTTCTTCAAAATCACAGCGAAACATAGGAAGATCCATGCGAACAAGAAGATCCAGTATCTTCGATGAAGATAACAGTAGCTGCACTTTTACCGAAAGATCCACCTGTGTATCGGAAAATCTCACCGATTCCGTCGTCGACCTCCGTCTCGGTGAACTCGCTTCCAAGAATCACAAATCCGGAAAATCATCAACTTCTGAACAAGACCTTCTAGATCTTTCTCAAGCTTTTAGTGAATATGCTTATTCAGCTTGTAGTAGTGATATCTCCGGTGAGCTTCAACGGTTGGCGACGTTACCGTCGCCGGAGTGTGACGGTGGAAGTGGTGTTGGAGGTGATGGTGTGGTTGAAGTTGTTGAACCGGAGCCTTGCATGGGGTTTTTACAAAGAGAGAATTTCTCGACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAACCGACGGTGAAGCTTTGTGTGGATGGTTTACAGTCTTCTTCAGTGGCTGTGAAACGGTCTGCTGCGGCGAAATTGAGGTTGCTTGCAAAGAATCGAGCTGATAATCGTGTTTTGATCGGTGAATCCGGTGCTGTACCTTTGCTTGTTCCTTTGCTTCGGTGTAGTGATCCATGGACACAAGAGCACGCGGTGACGGCGTTGTTGAATCTTTCTCTTCATGAAGATAATAAGAAACTGATATTTAATGCTGGAGCTGTGAAATCGTTGATTTATGTATTGAAAACTGGGACAGAGACTTCTAAGCAGAACGCCGCTTGTGCTCTGCTGAGTTTAGCGTTGGTGGAAGAGAATAAAAGCTCAATTGGAGCTTCGGGAGCGATTCCACCATTGGTTTCGCTTCTGTTAAACGGTTCAAACAGAGGGAAGAAAGATGCATTAACGACGCTGTACAAGCTTTGCTCTGTTAAGCAGAACAAGGAGAGAGCTGTTAGTGCTGGTGTGGTGAAGCCGTTGGTGGAGCTGGTGGCTGAGCAAGGGAATGGGATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGCGGGGTTTGACGAAGGGAAGGAAGCCATTGTGGAAGAAGGTGGAATTGCTGCGCTTGTGGAAGCCATTGAAGATGGGTCTGTGAAAGGAAAAGAATTTGCTGTTTTAACACTTTTGCAGCTTTGTGCTGAAAGTGTTACCAATAGAGGTTTGCTTGTTAGAGAAGGTGGGATTCCTCCTCTTGTCGCTCTTTCGCAAAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACGCTTCTTCGATATTTGCGAGAATCAAGACAAGAAGCATCAACTTCAACTTCGTAG 1383 0.4497 MVSLEDSRSNSNRFPLPKTYQYHSSISSKSQRNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASKNHKSGKSSTSEQDLLDLSQAFSEYAYSACSSDISGELQRLATLPSPECDGGSGVGGDGVVEVVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCVDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPLLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGFDEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0917 460 MobiDBLite consensus disorder prediction 1 40 - -
Mtr2g0917 460 SMART arm_5 410 450 IPR000225 GO:0005515
Mtr2g0917 460 SMART arm_5 368 408 IPR000225 GO:0005515
Mtr2g0917 460 SMART arm_5 245 285 IPR000225 GO:0005515
Mtr2g0917 460 SMART arm_5 204 244 IPR000225 GO:0005515
Mtr2g0917 460 SMART arm_5 286 326 IPR000225 GO:0005515
Mtr2g0917 460 Gene3D - 156 316 IPR011989 -
Mtr2g0917 460 Gene3D - 317 457 IPR011989 -
Mtr2g0917 460 Pfam Armadillo/beta-catenin-like repeat 288 326 IPR000225 GO:0005515
Mtr2g0917 460 Pfam Armadillo/beta-catenin-like repeat 206 243 IPR000225 GO:0005515
Mtr2g0917 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 215 257 IPR000225 GO:0005515
Mtr2g0917 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 297 339 IPR000225 GO:0005515
Mtr2g0917 460 MobiDBLite consensus disorder prediction 1 43 - -
Mtr2g0917 460 SUPERFAMILY ARM repeat 172 449 IPR016024 -
Mtr2g0917 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 338 380 IPR000225 GO:0005515
Mtr2g0917 460 PANTHER U BOX DOMAIN-CONTAINING 6 457 - -
Mtr2g0917 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0917 Mtr-Chr2 9487089 9490059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0917 152 453 U-box Gene Family AT2G23140 49.032 2.73e-85 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0917 - - gmx:100806768 715.687