Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0903 ATGTCACCAACCACCAAAATTCTCACGGCCAACCACCGCAAAAACCACTCCCCAAAACTCACATCCTCGTCTTCGAAGATGAAAAAGATCACGAAAACGAAATCATCGAAATTACAATTCTTCGTCCGCATGATGTGGAACTGTAACACCTTAGTGATTCGTGCTTCTAGAGAAAAAACAGTTGAATCGCTTCTCGAACAAATTTCGTCTAAAACCAGAATTCCGATTCAACATCAACGATTAATTTACGAAGGAAAACAGCTTACTCTAGAACAGAGTCTCTGCGAATGCGGCATCGAAAACGATGCAAATCTTCAATTGGTTGGTCGCTTGAGGAGTATAGCGTGTCCTAAAGTGTGGAAAGCCACACAATATATTGTTTCTTTGATTCTCAGGCTCTGTAGAGGTGAATTGGTGATTGGTGCTTCGAGAATTATTGATGATCACCTTACATATTACATCAATGATTCTGAATATTTTTCTGTTTTCATGTTTATGGAAATTCCTTCACTGTTGGTAGCTCTTTATATGTCACGGTATGCAAATGCGTGTGTTGCTGATTCCGTGATTAAGGATTTTGTGAGAATTTGTTTAGATTTGAAGGACAAAAAGTTGCAGGGTGTTTACCTTGAAGTGTCATTGGAGTTTTGTGAATTGCTTAGAAGGGCACGGTGTAAGTATGATGATCCTCTGTATGTTTTTTGCCGGGATAGTTTTTCATCTTTGTTGACGCTTGTTGGTCGTGTTAACTTTCAGAATCCTAAAGGAGAGGTCATGCTTCGGGGTGTTTTTGACTGTGTTCACGAGATCGCAGATGAGTTGTTGAGGTTTTTGGATCTGAGTATGAACTGTCCCACGGGTGAGGGGTTTTCGTTCAACTTTGTTTTGGATTTTGTTAAATTCTCTGGCCATTTAAGGATGGGATTGGCCGAGCAGCAAGCAACATCCGATGAATTTTTGAATTGCACTATTGGTTACGAAGAGGAACCCTTGATTGCAGGAGTAGTTGATCAACTTCATATTGTATTTATTAAGTTATTGAGCAAAATGGATGAGTGCCTTCAAGTCATGGAGGATTGCTTGGTTAACAAGAAACATGGAAAAGGTGATGGGGCCGTTATCAATAATGGGTGGTCTCATTATATTATAATCCTGAAGGTATTGTATCACATATCTAAGCTCTATAGCGGTGCAAAAGAGATGTTTTGGGAAGTTTTGTTGCGTCAAAAAAGTATGCTATCTCATATGATTGTTCGGTACTCGAAGAATACTGATGATCATCGGTGGGTTCTCGAGAACAGAAGTGTGACCGATTTTGAATGCAGGAGGCATTTGGCGATGATGATGTTCCCCGACTTAAATGATGAATCGTTGGGATATGAGATGCTTATTGACAGGTCTCAGCTTTTGGCTGAATCTTTCGAGTACATATCACAAGCTAATTCTACATCTTTGGAGGGTGGTCTATTTATGGAATTCAGGAATGAGGAGGGTACAGGACCGGGTGTAGTAAGGGAGTGGTTGGTTTTGGTGTGTCAAGAAATATTTAATCCGGAACATGCCCTTTTTGTGGCATGTCCAAATGACCGCAGGAGATTTTTTCCTAATGCTGCATCTAAGGTAAATCCTCTGCACCTAAAGTACTTCAGCTTCTCTGGACGTATGATTGCGTTAGCTTTGAAGAATAAGGTGCACGTGGGTATTGTTTTTGATCGTGTATTTTTCAAGCAATTGGCTGGAAACTATATTATTACTTTAGAAGATATTCGGAATGCAGATCCTATAATGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTATATTGATTCAGATGCATTAGGACTGACATTTTCTATAGAGGTAGAGGAATTAGGACACAGGAAAGTGATTGAGCTCTGCTCTGGTGGGGAAAGCATTGTCGTGAATAGTAAGAACAGGGAGAAATATGTTGATCTTCTTATACAGAATCGTTTTGTGAAATCCATATCTGAGCAGGTATCGCATTTTGCCGAGGGTTTTGCTGATATTATATCTGGCTCAAGGCTAGAGTTCTTTCAATTTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATGCCATTTCTGTTGAAGATTGGAAGGCACATACCAAGTACCGTGGCTATAAAAAGAATGATTGTCAGATATCTTGGTTTTGGAAGATCGTTGGAAGAATGTCAGCAGAGCAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTAAAGGTTTCCATGGTTTGGATTCTTGTCTATTCATTTGCAAATCCAGTGAACCTAATAATCACTTGCCCTCATCTCACACTTGTTTCTATGAGCTGTGCTTTCCCCCGTATTCTTCTATGGCTATCATGCAAGATCGCCTTGGAATCATTACTCAAGAGCACGTCGGCTTCAGTTTTGGTGCTCCATAA 2463 0.4003 MSPTTKILTANHRKNHSPKLTSSSSKMKKITKTKSSKLQFFVRMMWNCNTLVIRASREKTVESLLEQISSKTRIPIQHQRLIYEGKQLTLEQSLCECGIENDANLQLVGRLRSIACPKVWKATQYIVSLILRLCRGELVIGASRIIDDHLTYYINDSEYFSVFMFMEIPSLLVALYMSRYANACVADSVIKDFVRICLDLKDKKLQGVYLEVSLEFCELLRRARCKYDDPLYVFCRDSFSSLLTLVGRVNFQNPKGEVMLRGVFDCVHEIADELLRFLDLSMNCPTGEGFSFNFVLDFVKFSGHLRMGLAEQQATSDEFLNCTIGYEEEPLIAGVVDQLHIVFIKLLSKMDECLQVMEDCLVNKKHGKGDGAVINNGWSHYIIILKVLYHISKLYSGAKEMFWEVLLRQKSMLSHMIVRYSKNTDDHRWVLENRSVTDFECRRHLAMMMFPDLNDESLGYEMLIDRSQLLAESFEYISQANSTSLEGGLFMEFRNEEGTGPGVVREWLVLVCQEIFNPEHALFVACPNDRRRFFPNAASKVNPLHLKYFSFSGRMIALALKNKVHVGIVFDRVFFKQLAGNYIITLEDIRNADPIMYSSCKQILEMDADYIDSDALGLTFSIEVEELGHRKVIELCSGGESIVVNSKNREKYVDLLIQNRFVKSISEQVSHFAEGFADIISGSRLEFFQFLDLEDLDWMLHGSENAISVEDWKAHTKYRGYKKNDCQISWFWKIVGRMSAEQRKVLLFFWTSVKHLPVKGFHGLDSCLFICKSSEPNNHLPSSHTCFYELCFPPYSSMAIMQDRLGIITQEHVGFSFGAP* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0903 820 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 18 817 - -
Mtr2g0903 820 Gene3D Hect, E3 ligase catalytic domain 704 817 - -
Mtr2g0903 820 Pfam HECT-domain (ubiquitin-transferase) 510 817 IPR000569 GO:0004842
Mtr2g0903 820 Gene3D - 30 122 - -
Mtr2g0903 820 SUPERFAMILY Hect, E3 ligase catalytic domain 460 805 IPR035983 GO:0004842
Mtr2g0903 820 Gene3D Hect, E3 ligase catalytic domain 581 664 - -
Mtr2g0903 820 ProSiteProfiles Ubiquitin domain profile. 38 113 IPR000626 GO:0005515
Mtr2g0903 820 CDD HECTc 461 816 IPR000569 GO:0004842
Mtr2g0903 820 Gene3D Hect, E3 ligase catalytic domains 463 695 - -
Mtr2g0903 820 SUPERFAMILY Ubiquitin-like 34 113 IPR029071 -
Mtr2g0903 820 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 18 817 - -
Mtr2g0903 820 ProSiteProfiles HECT domain profile. 481 818 IPR000569 GO:0004842
Mtr2g0903 820 Pfam Ubiquitin family 41 112 IPR000626 GO:0005515
Mtr2g0903 820 SMART hect_3 479 818 IPR000569 GO:0004842
Mtr2g0903 820 SMART ubq_7 38 110 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0903 Mtr-Chr2 9288043 9292745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0903 38 112 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 33.333 6.70e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0903 - - mtr:MTR_2g025790 1190.64