Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0902 ATGTCATCGATCATTAAAACCCTCATCGGCGGTTGTTTCTATGGCACCACCGCCGACCACCACAGCAACCATTCCCCGGAGCTCAAATTCAATGACACCAAAACGACGTCGTCAGAGTTGCAATTCTTTGTTCGCATGATGTGGAAATGTAACACCATAGTCATTCACGCTTCAAGAGAAGACACAGTGGAATCTATTCTCCAACAAATTTCATCCAAAACCAAAATTCCTATTGAATATCAACGATTGATCTACAATGGAAAACAGCTTCAGCAACAACAGAGTCTCAGCCAATGCGGCATCGAAAACGACGCCAATCTTCAATTGGTTGGTCAATTGAGGAGTATAGTGCGTTCTGTAGTGTGGAATTCTACAGATGATATTGTTTCAATGATTCTCAAACTCTGTAGAGGTGAACCAGTGATTGGTGCTTCCATAAATTTTTGTAAACACTTTACAAAGTATATGCATAATTCCTTCTATGTTATCAAGATTATGAAAATTCCCTCTCTGTTGGTAGCTCTTTTTAAGTCTCCTCACGCAAGTAATGCAAGCATTGCTGATTCATCTATTAGGAATTTCGTGAAAGTTTGTTTAGATTTGAAGTGCAAAACGTTGCAGAGTGCTTACCTAGAAGTGTTGTTGGAGTTTTGTGAATTGCTTAGAGGGGTAGGGTGTAAGTGTGATCATCCTTTGTATGTTTGTTGTCGGGATGGTTTTGTGGAATTGTTGATTCTTGTTGGCGGTGTTCTCATCAAGAATCCTAAAATGAAGGTTTTGCTTCGGGGTGTTTTTGACTGTGTTCGAGAGATCACAGATGAGCTGTTGAGGTTTTTGGATTTGAGTATGAATTTTCCCACTAAAAGGGGGCTTTCGTACAAAGTTGTTTTTGATTTTGTTAAATTCTGTTGCCCTTTGAGGATGGGATTCGCCAAGGAGCAAGCAACATCTTTGAATTGTGATATTTGCTATGAGGAGGATCCCTTGTTTTTAGGAGTGCCTGATCAACTTCATATTGTATTTATTAAGTCATTGAGCAAAATGGACGAGTGCCTTCAAGTCATGGAAGATTGCTTGGTTAACAAGAAACGTGGAAAAGGCGAATTGGATGTTCTCCATAATTGTTATCTTATTATTCTTAAGGAATTGTTTCACATCTCCAAGTTCTATAGCGGTGCACAAGAACAGTTTTGGGGACTTTTCTTGCGTCGAAAAAATGTGCTACCTCATATGATTGTTCGGTACGTGAAGAAACCTGATGATCATTGGTGGCTTCTTGAGAACAGAATTGTGACTGATTTTGAATCCAGGAAGCATTTGGTGATGATGCTATTCCCTGACTTAAAAGATAAAATATTGGGATATGAGATGCTTATTGACAGGTCTCAGGTTTTGGCTGAATCTTTTGAGTACATATCACGAGCTATGCCTAAATCTCTGCAGGGTGATCTATTTATGGCATTCAAGAATGAGAAAGCTACAGGACCAGGTGTACTGAGGGAGTGGTTTGTTTTAGTGTGTCAGGAAATATTTAATCCAAGAAATGCTCTTTTTGTGGCATGTCCAAATGACCACAGGAGATTTTTTCCTAATACTGCATCTATGGTAAATGCTCTGCACCTAAAGTACTTCATCTTCTCTGGACGTATTATTGCATTAGCTTTGAAGAAGAAGGTGCGCGTGGGTATTGTTTTTGATCGTGTATTTTTCAAGCAATTGGCTGGAAACTATATTATTACTTTAGAAGATATTCGGGATGCAGATCCTATAATGTATAGTAGCTGCAAGCAAATATTGGAGATGGAGGCTGATTATATTGATTCAGATGCATTAGGACTGACATTTTCTATAGAGGTGGAGGAATTAGGACACAGGGAAGTGATTGAGCTCTGCCCTGGTGGAGAAAGCCTTGTTGTGGATAGTAAGAACAGGGAGAAGTATGTTCATCTTCTTATACAAAGTCGTTTTGTGACATCCATATCTGAGCAGATATCACATTTTGCCCAAGGTTTTGCTGATATTATATCTTGCTCAAGTCTAGAGTTCTTCCAATTTTTACACCATGAAGATTTTGATTGGATGCTGCATGGGAGTGAAAATGACATTTCTGTTGAAGATTGGAAGGCACATACCAAGTATCATGGCTATAAAGAGAACGATCGTCAGATATCTTGGTTTTGGAAGATCGTTGGGAGAATGCCAGCAGAGCAAAAGAAGGTTCTTCTGTTCTTCTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTCCATGGCTTGAATTCCCGTCTATTAATTTGCAAATCCCATGAACCTGATAATCATCTGCCCTCATCTCACACATGTTTTTACAAGTTGTGCTTTCCCCCGTATTCTTCTATAGCTATCATGCAAGATCGCCTTGGAATCATCACTCAAGAACACATCAGCTGCAGTTTCGGTACTCGATAA 2448 0.3942 MSSIIKTLIGGCFYGTTADHHSNHSPELKFNDTKTTSSELQFFVRMMWKCNTIVIHASREDTVESILQQISSKTKIPIEYQRLIYNGKQLQQQQSLSQCGIENDANLQLVGQLRSIVRSVVWNSTDDIVSMILKLCRGEPVIGASINFCKHFTKYMHNSFYVIKIMKIPSLLVALFKSPHASNASIADSSIRNFVKVCLDLKCKTLQSAYLEVLLEFCELLRGVGCKCDHPLYVCCRDGFVELLILVGGVLIKNPKMKVLLRGVFDCVREITDELLRFLDLSMNFPTKRGLSYKVVFDFVKFCCPLRMGFAKEQATSLNCDICYEEDPLFLGVPDQLHIVFIKSLSKMDECLQVMEDCLVNKKRGKGELDVLHNCYLIILKELFHISKFYSGAQEQFWGLFLRRKNVLPHMIVRYVKKPDDHWWLLENRIVTDFESRKHLVMMLFPDLKDKILGYEMLIDRSQVLAESFEYISRAMPKSLQGDLFMAFKNEKATGPGVLREWFVLVCQEIFNPRNALFVACPNDHRRFFPNTASMVNALHLKYFIFSGRIIALALKKKVRVGIVFDRVFFKQLAGNYIITLEDIRDADPIMYSSCKQILEMEADYIDSDALGLTFSIEVEELGHREVIELCPGGESLVVDSKNREKYVHLLIQSRFVTSISEQISHFAQGFADIISCSSLEFFQFLHHEDFDWMLHGSENDISVEDWKAHTKYHGYKENDRQISWFWKIVGRMPAEQKKVLLFFWTSVKHLPVEGFHGLNSRLLICKSHEPDNHLPSSHTCFYKLCFPPYSSIAIMQDRLGIITQEHISCSFGTR* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0902 815 Pfam Ubiquitin family 43 113 IPR000626 GO:0005515
Mtr2g0902 815 SMART hect_3 474 813 IPR000569 GO:0004842
Mtr2g0902 815 ProSiteProfiles HECT domain profile. 497 815 IPR000569 GO:0004842
Mtr2g0902 815 CDD HECTc 456 813 IPR000569 GO:0004842
Mtr2g0902 815 Gene3D Hect, E3 ligase catalytic domains 458 684 - -
Mtr2g0902 815 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 26 813 - -
Mtr2g0902 815 Gene3D Hect, E3 ligase catalytic domain 698 814 - -
Mtr2g0902 815 SMART ubq_7 40 112 IPR000626 GO:0005515
Mtr2g0902 815 Pfam HECT-domain (ubiquitin-transferase) 505 807 IPR000569 GO:0004842
Mtr2g0902 815 Gene3D Hect, E3 ligase catalytic domain 576 659 - -
Mtr2g0902 815 SUPERFAMILY Hect, E3 ligase catalytic domain 455 800 IPR035983 GO:0004842
Mtr2g0902 815 PRINTS Ubiquitin signature 51 71 IPR019956 -
Mtr2g0902 815 PRINTS Ubiquitin signature 72 92 IPR019956 -
Mtr2g0902 815 PRINTS Ubiquitin signature 93 114 IPR019956 -
Mtr2g0902 815 ProSiteProfiles Ubiquitin domain profile. 40 115 IPR000626 GO:0005515
Mtr2g0902 815 SUPERFAMILY Ubiquitin-like 35 114 IPR029071 -
Mtr2g0902 815 Gene3D - 32 123 - -
Mtr2g0902 815 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 26 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0902 Mtr-Chr2 9279810 9284681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0902 40 114 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.667 1.59e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0902 - - mtr:MTR_2g025790 1370.53