Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0901 ATGTCATCAATCACTAAAACCATCGCCGGCGGTTGTTTCCACCAACAGAGCATCAATGGTGCCACCGCCGACCACCTCAGCAACCATTCCCCGGAGCTCAAATTCAATGACACCAAAACGACGTCGTCAGAGTTGCAATTCTTTGTTCGCATGATGTGGAAATGTAACACCATAGTCATTCACGCTTCAAGAGAAGACACAGTGGAATCTATTCTCCAACAAATTTCATCCAAAACCAAAATTCCTATTGAATATCAACGATTGATCTACAATGGAAAACAGCTTCAGCAACAACAGAGTCTCAGCCAATGCGGCATCGAAAACGACGCCAATCTTCAATTGGTTGGTCAATTGAGGAGTATAGGGCGTTCTGTAGTGTGGAATTCTGCAGATGATATTGTTTCAATGATTCTCAACCTCTGTAGAGGCGAATCGCTGAATGGTGCCTCCATGATTATTCATAATCACTTTGCAAAGTATATGAATAATTTTGAATATTTTTATTTTTTCAAGTTAATGAAAATTCCTTCTCTGTTGGTAGCACTTTATATGTCCCCGTTTGCATGTAACAAGAATATTGCTGATTTCTCTATTGAAAGTTTCATCGAAATTTGTTTAGATTTGAAGTGCAAAAAGTTGCAGGGTTTCTACCTTGAAATTTTGTTGGATTTTTGTGAATTGCTTAGAGGGGTAGGTTTTACGTGTGATGAGCCTTTGTATGTTTCTTGTCGGGATGGTTTTGGAAATTTGTTGACACTCGTTGGTGGTGTCCCCATTAACAATCCTAATATGAAGGTTTTGCTTCGGGGTGTTGTTGACTGTGTTCACGAGATCGCAGACGAGTTGTTGATGTATTTGGATTTGAGTATGAATTGGGACACTGCCAAGGGGATTTCGTACAAAGTTGTTTTGGATTTTGTTAAATTCTGTGGCCCTTTGAGGATGGGATTTGCCGAGGAGCAAGCAACATCCGATGAATCTTTGAATTATGATATTTGCTATGAGGAGGATCCCTTGTTTTCAGGAGTACCTGATCAACTTCATATTGTATTTATTAAGTTATTGAGCAAAATGGACGAGTGCCTTCAAGTCATGGAAGATTGCTTGGTTAACAAGGAACAAGGAAAAGGGGATGTTATCCATAATGGGTGGTCCCATTATCTTATTATTCTTAAGGAATTGTTTCACATCTCCAAGTTCTATAGCGGTGCACAAGAAAAGTTTTGGGGACTTTTATTGCATCGAAAAAATGTGCTACCTCATATGATTGTTCGGTACGTGAAGAAAACCGATGATCATCAATGGCTTCTTGAGAACAAAATTGTGACCGATTTTGAATCCAGGAGGCATTTGGCGTTGATGCTATTCCCTGACTCAAAAGATGAAATATCGGGATATGAGATGCTTATTGACAGGTCTCAGGTTTTGGCTGAATCTTTTGAGTACATGTCTCGAGCTAAGGCTAAATCTCTGCAGGGTGGAATATTTATGGCATTCAAGAATGAGAAAGCTACAGGACCGGGTGTACTGAGGGAGTGGTTTGTTTTGGTGTGTCGGGAAATATTTAATCCAAAAAATGCTCTGTTTGTGGCATGTCCAAATGACCACAGGAGGTTTTTTCCTAATGCTGCATCTAAGGTAAATTCTCTGCACCTAAAGTACTTCATCGTCTCTGGACGTATTATTGCATTAGCTTTGAAGAAGAAGGTGCACGTGGGTATTGTTTTTGATCGTGTGTTTTTCAAGCAATTGGCTGGAAACTATATTATTACTTTAGAAGATATTCGGGATGCCGATCCTATAATGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTATATTGATTCAGATGCATTAGGACTGACATTTTCTACAGAGGTAGAAGAATTAGGACACAGGGAATTGATTGAGCTCTGCCCTGGGGGAGAAAGCCTTGTTGTGGATAGTAAGAACAGGGAGAAGTATGTTCATCTTCTCATACAGAATCGTTTTGTGACATCCATATCTAAGCAGGTATCACATTTTGCCGAAGGTTTTGCTGATATTTTATCTTGCTCAAGGCTCGAGTTCTTTCAATTTTTAGACCTTGAAGATTTTGATTTGATGCTGCATGGCAGTGAGAATGCCATTTCTGTTGAAGATTGGAAGGTACATACCAAGTATCATGGCTATAAAGAGAATGATCATCAGATATCTTGGTTTTGGAAGATCGTCGGGAGAATGTCAGCAGAGCAAAAGAAAGTTCTTCTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTCCGTGGCTTGAGTTCCACTCTATTAATTTCCAAATCCAGCAAACCTGATAATCACTTGCCCTCATCTCACACATGCTTTTACAAGCTGTGCTTTCCTCCATATTCTTCTATGGCTATCATGCAAGATCGCCTTGGAATCATCACTCAAGAGCACATAAGCTGCAGTTTCGGTACTGCATAA 2481 0.3978 MSSITKTIAGGCFHQQSINGATADHLSNHSPELKFNDTKTTSSELQFFVRMMWKCNTIVIHASREDTVESILQQISSKTKIPIEYQRLIYNGKQLQQQQSLSQCGIENDANLQLVGQLRSIGRSVVWNSADDIVSMILNLCRGESLNGASMIIHNHFAKYMNNFEYFYFFKLMKIPSLLVALYMSPFACNKNIADFSIESFIEICLDLKCKKLQGFYLEILLDFCELLRGVGFTCDEPLYVSCRDGFGNLLTLVGGVPINNPNMKVLLRGVVDCVHEIADELLMYLDLSMNWDTAKGISYKVVLDFVKFCGPLRMGFAEEQATSDESLNYDICYEEDPLFSGVPDQLHIVFIKLLSKMDECLQVMEDCLVNKEQGKGDVIHNGWSHYLIILKELFHISKFYSGAQEKFWGLLLHRKNVLPHMIVRYVKKTDDHQWLLENKIVTDFESRRHLALMLFPDSKDEISGYEMLIDRSQVLAESFEYMSRAKAKSLQGGIFMAFKNEKATGPGVLREWFVLVCREIFNPKNALFVACPNDHRRFFPNAASKVNSLHLKYFIVSGRIIALALKKKVHVGIVFDRVFFKQLAGNYIITLEDIRDADPIMYSSCKQILEMDADYIDSDALGLTFSTEVEELGHRELIELCPGGESLVVDSKNREKYVHLLIQNRFVTSISKQVSHFAEGFADILSCSRLEFFQFLDLEDFDLMLHGSENAISVEDWKVHTKYHGYKENDHQISWFWKIVGRMSAEQKKVLLFFWTSVKHLPVEGFRGLSSTLLISKSSKPDNHLPSSHTCFYKLCFPPYSSMAIMQDRLGIITQEHISCSFGTA* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0901 826 Gene3D Hect, E3 ligase catalytic domain 587 670 - -
Mtr2g0901 826 SMART ubq_7 45 117 IPR000626 GO:0005515
Mtr2g0901 826 SMART hect_3 485 824 IPR000569 GO:0004842
Mtr2g0901 826 PRINTS Ubiquitin signature 56 76 IPR019956 -
Mtr2g0901 826 PRINTS Ubiquitin signature 77 97 IPR019956 -
Mtr2g0901 826 PRINTS Ubiquitin signature 98 119 IPR019956 -
Mtr2g0901 826 Pfam Ubiquitin family 48 118 IPR000626 GO:0005515
Mtr2g0901 826 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 36 824 - -
Mtr2g0901 826 SUPERFAMILY Ubiquitin-like 41 119 IPR029071 -
Mtr2g0901 826 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 36 824 - -
Mtr2g0901 826 CDD HECTc 467 824 IPR000569 GO:0004842
Mtr2g0901 826 Pfam HECT-domain (ubiquitin-transferase) 516 818 IPR000569 GO:0004842
Mtr2g0901 826 Gene3D Hect, E3 ligase catalytic domain 709 825 - -
Mtr2g0901 826 ProSiteProfiles HECT domain profile. 508 826 IPR000569 GO:0004842
Mtr2g0901 826 Gene3D - 37 130 - -
Mtr2g0901 826 Gene3D Hect, E3 ligase catalytic domains 469 700 - -
Mtr2g0901 826 ProSiteProfiles Ubiquitin domain profile. 45 120 IPR000626 GO:0005515
Mtr2g0901 826 SUPERFAMILY Hect, E3 ligase catalytic domain 466 811 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0901 Mtr-Chr2 9268442 9272201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0901 45 119 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.667 9.37e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0901 - - mtr:MTR_2g025790 1655.19