Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0872 ATGAGTCAACTCGGTTTATTATTGCAAGAACCGGTTCAGTCTCAAACTGAGTCAACAACGATTCTCGGTTTGTTAAGAGAACAAATGGACGGTGTTGATGGAGTTCCTCGTCGGAGACGAAGTTTCAAGGAACGGTTAGGATTTATTGGATGCTGTGGGGCCAATTGGGGATTCCGTTCTTCTTCTTCATCTGACTCACAACAGAATCAGCAACGGATTCTTGATACGGATCCGAGTGAAGATCCGAATATGTGTGTGGCTCCGGTGATTCAAACAGGTTCCAGTTCTTCGAGTATGAATCTTGCAGCGGCGTTGGCGGCAGAGAGGCAACTCCGAGGACCGGCGGCGGAAACGAGTGGCGGAGGAGGGAGGATGCCTGGGACGCCGTGGAGAGTGTCCTTGATGCGGTTGTTGGAGGAAACGGAAAACGGTGATACGGTGGTGGTTAAGGCGGAGGAGAAAGTTGGCACTATGGCGGGGAATGATTCAGTGTGTTGTGTGTGCATGGGGAGGAATAAAGGTGCGGCGTTTATTCCATGTGGACATACTTTTTGCAGGGTTTGTTCTAGGGAGCTGTGGTTGAATAGAGGCTCTTGTCCCCTTTGTAATCGTTCTATTATTGAGATTCTTGACATTTTTTAG 642 0.4891 MSQLGLLLQEPVQSQTESTTILGLLREQMDGVDGVPRRRRSFKERLGFIGCCGANWGFRSSSSSDSQQNQQRILDTDPSEDPNMCVAPVIQTGSSSSSMNLAAALAAERQLRGPAAETSGGGGRMPGTPWRVSLMRLLEETENGDTVVVKAEEKVGTMAGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSIIEILDIF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0872 213 MobiDBLite consensus disorder prediction 59 83 - -
Mtr2g0872 213 MobiDBLite consensus disorder prediction 59 77 - -
Mtr2g0872 213 SUPERFAMILY RING/U-box 159 210 - -
Mtr2g0872 213 Pfam Zinc finger, C3HC4 type (RING finger) 162 208 - -
Mtr2g0872 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 212 IPR013083 -
Mtr2g0872 213 CDD RING-HC 165 202 - -
Mtr2g0872 213 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 213 - -
Mtr2g0872 213 ProSiteProfiles Zinc finger RING-type profile. 165 203 IPR001841 -
Mtr2g0872 213 PANTHER OS01G0917900 PROTEIN 18 213 - -
Mtr2g0872 213 SMART ring_2 165 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0872 Mtr-Chr2 8935328 8936582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0872 21 213 C3H Transcription Factor Family AT4G22250 53.695 9.93e-62 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0872 - - gmx:100804959 253.062