Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0864 ATGGTAGAACCAAAGATTTCCGCCATATCTCCACCACAACCCAGCCGTGTAGAACCAAAACTTTGGCAGTATTGCGCCGGACACTCCGTCAAAATTCCTAAACTTCATTCAAAGGTTTACTATTTCCCGCAAGGTCACTTAGAACATGCTTGCCTTAATTTCCCCAACACTGAAACCCTATCCCTTCTTGATGGTCACCGTCCTTTCAATCCTTGCATCGTATCGGCGGTTGATTACCTCGCCGATCCTCATACCGATGAAGTCTTCGTCAAACTGCTCCTAACTCCCATCACCGATGGTTGTGTTCACGAACCTCCTGCTGAGGTTCGGGAAGACGAACCTAAAGGTGATGAGTTTGTTTCCTCTGGAAAGACTCTAACCCTATCTGATGCTAATAACGGTGGTGCATTCTCCGTACCTCGTTCTTGCGCGACATCAATCTTCCCACAGCTTGACCTCGAAACAAAACAGCCATCTCAAGAACTGTCTGTTACCGACATTCATGGCAAAATCTGGGAGTTTCGCCATGTCTACCGTGGAACTCCCTTGAGACACCTGATCACCACTAATTGGAGTAAGTTTGTGGACGAAAAGAAACTCGTCTGCGGTGATTCCGTAATTTTTATGAAAAAGAAAAACTCATTTGGAGATATCTTTGTCGGAATCCGTCGGCATACTAAGTTTGGTGCTGCTAAGATAACTAAAGAATCGGTTATGGAGGCAGTGGAGTTGGCGAATAAGAACATCGCTTTTGAAGTTGAGTATCATCCTACGGTTGAAGGGTTTTGTGATTTTGTGGTGGATGCCAAGGTTGTTGAGGATGCAATGAAGATTAACTGGAATTGTGGAATGAAAATTAAATTTTCTTTGAAGAATGAGGATTCTTCAAAGAGATGGTCAGTTTTTAAGGGTACAATATCCGCTCTCTCAGCTCCTAATCGTCCATGGCGCATGCTTGAGGTTAACTGGGATGGGCCTGAAATCCCACATAATCCAAAGCAAAGTCCTTGGGAGGTTGAACTAATTTCTTATATACCTGCACTGAATCTACAATTGCCCCCAACAAAAAGGCTTAGAGCTGCTCAGGGTTCTACCTCATTAGATAATATAGAGAGATCTTCCATTCCAATGATAGATTTCCAGCAGTCACCAGCAAAATCCTTGAATCAAGCATTGTTGGATTGTGATACTTTTATTGAGGGCATGCAGAGAGCCCAAGACAAAAAAAATTCCACAGCAACTACTACCAACTTTTTGAATGTTAAGGCCAATGATTTAATTGAGAAAAATTCAATGGCAAGGTTGGATATTGTGTCAATTGAGTCAAACATTAGCACTCCTATATTTGGTGACTTGTCACCTCTTAACCATAGCATTTTGAACCCCTTCGAGACAAAGTTTGATGGTTCCCAGAAGTGCAACACCAAAGAAGTTAATCCCGGTTCATTTATTCTATTTGGTAAGATGATACATTTACATCCTGTTGAAAGTAATTTGCATGATTCTGCTACCAAGGGAGAAGATGGTTGTATGGGCTGCAATAATTGA 1548 0.4218 MVEPKISAISPPQPSRVEPKLWQYCAGHSVKIPKLHSKVYYFPQGHLEHACLNFPNTETLSLLDGHRPFNPCIVSAVDYLADPHTDEVFVKLLLTPITDGCVHEPPAEVREDEPKGDEFVSSGKTLTLSDANNGGAFSVPRSCATSIFPQLDLETKQPSQELSVTDIHGKIWEFRHVYRGTPLRHLITTNWSKFVDEKKLVCGDSVIFMKKKNSFGDIFVGIRRHTKFGAAKITKESVMEAVELANKNIAFEVEYHPTVEGFCDFVVDAKVVEDAMKINWNCGMKIKFSLKNEDSSKRWSVFKGTISALSAPNRPWRMLEVNWDGPEIPHNPKQSPWEVELISYIPALNLQLPPTKRLRAAQGSTSLDNIERSSIPMIDFQQSPAKSLNQALLDCDTFIEGMQRAQDKKNSTATTTNFLNVKANDLIEKNSMARLDIVSIESNISTPIFGDLSPLNHSILNPFETKFDGSQKCNTKEVNPGSFILFGKMIHLHPVESNLHDSATKGEDGCMGCNN* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0864 515 Gene3D - 123 226 IPR015300 -
Mtr2g0864 515 SMART B3_2 119 226 IPR003340 GO:0003677
Mtr2g0864 515 PANTHER AUXIN RESPONSE FACTOR 10 231 - -
Mtr2g0864 515 PANTHER AUXIN RESPONSE FACTOR 227 513 - -
Mtr2g0864 515 ProSiteProfiles B3 DNA-binding domain profile. 122 226 IPR003340 GO:0003677
Mtr2g0864 515 Pfam Auxin response factor 241 319 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr2g0864 515 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677
Mtr2g0864 515 SUPERFAMILY DNA-binding pseudobarrel domain 121 224 IPR015300 -
Mtr2g0864 515 Gene3D - 279 346 - -
Mtr2g0864 515 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 231 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr2g0864 515 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 227 513 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr2g0864 515 CDD B3_DNA 124 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0864 Mtr-Chr2 8856266 8858846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0864 17 510 B3 DNA Binding Superfamily AT1G77850 36.364 2.77e-102 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr2g0864 B3 4.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0864 - - mtr:MTR_5g040880 541.576