Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0862 ATGGAGGGTAGTTCTAATGGAAGTTGTTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCATCTCATCATAATGCTCATCATCCAATAAATTCCAATAACAACAATACTAATGCAAACAACACAACCGGTCTTTTCCTTCCTATCCCTAATTCCACTAACAATAATAACAATCACTACACCAACTGTAATAACAACACCTCTTCTATCATGCTTCAAAATAACCATCAAAACACTCCTGGTTTAGGTTACTATTTCATGGACAACATCAACAACCATGGAAGCTCTTCTTCCTCTTCTTCTTCTGTCAAATCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAACTGTCAAAAGGTTGGAGCACCAAGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCAACTGCAGTGAGAATGGGTGGAGATGCAGTTGGATCAGGTTGTTTAGGTGAAGATCCAGCTCTAGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAGTATGAGCAAGAACTTTCCAAACCCTTAAAGGAAGCTATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCATCTTCAGATAATATTGCTTGTAGTGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATCTATACAACAACATGATAGATCCTCAAGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAATACAGTGGATACTTAGGCAGTCTGAAGCAAGAGTTTATGAAGAAAAGGAAAAAAGGAAAGCTTCCAAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTAGCAGAATCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGTCATCCACACTATTACATGGATAATGTTCTCACCAATTCATATCCCATGGATCTATCTAACACCATGCTCTAG 1125 0.4 MEGSSNGSCSYVMGAFGENSGGLCPPMMMMPLVTSSHHNAHHPINSNNNNTNANNTTGLFLPIPNSTNNNNNHYTNCNNNTSSIMLQNNHQNTPGLGYYFMDNINNHGSSSSSSSSVKSKIMAHPHYHRLLEAYINCQKVGAPSEVVARLEEACATAVRMGGDAVGSGCLGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACSEGGDRNGSSEEDHVDLYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLTNSYPMDLSNTML* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0862 374 SMART KNOX2_2 166 217 IPR005541 GO:0003677|GO:0005634
Mtr2g0862 374 Pfam ELK domain 256 277 IPR005539 GO:0003677
Mtr2g0862 374 PANTHER - 2 363 - -
Mtr2g0862 374 ProSitePatterns 'Homeobox' domain signature. 314 337 IPR017970 GO:0000981|GO:0006355
Mtr2g0862 374 ProSiteProfiles ELK domain profile. 256 276 IPR005539 GO:0003677
Mtr2g0862 374 SMART HOX_1 278 343 IPR001356 GO:0003677
Mtr2g0862 374 CDD homeodomain 288 340 IPR001356 GO:0003677
Mtr2g0862 374 Pfam KNOX2 domain 170 216 IPR005541 GO:0003677|GO:0005634
Mtr2g0862 374 SUPERFAMILY Homeodomain-like 278 354 IPR009057 -
Mtr2g0862 374 SMART KNOX1_2 115 159 IPR005540 GO:0003677|GO:0005634
Mtr2g0862 374 SMART ELK_2 256 277 IPR005539 GO:0003677
Mtr2g0862 374 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677|GO:0006355
Mtr2g0862 374 Gene3D - 281 343 - -
Mtr2g0862 374 Pfam KNOX1 domain 117 155 IPR005540 GO:0003677|GO:0005634
Mtr2g0862 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 363 - -
Mtr2g0862 374 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0862 Mtr-Chr2 8824931 8831606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0862 117 374 Homeobox Transcription Factor Family AT1G62360 78.707 1.88e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr2g0862 KNOX2 8.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0862 - - gmx:100805837 515.383