Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0844 ATGGCCACTTTAATCAACTTTATTATTCTCCTTCATCTTATCTCATTATGTTTAATTCTACCAACCTTAGCTAAAAATTCAGATTCAAAAAATGATTATAACAACGACCTATTAGACAATATTCCAACTCCAAGTTACAGCAACAACATCCCCAATAGTAACACTCCACAAAATGTTGCTGTCATGAACACAATTGACTCATGCTGGAGATCAAATTCAAATTGGGTTTCAAATCGTCAATCACTAGCAGATTGTGCAATTGGATTTGGCAAAGATGCAATTGGAGGAAAATATGGTGAGATATATGAAGTCACTGACCCTTCTGATGACCCTATAAACCCAAAAAAAGGTACACTTCGTTATGGTGTAATTCAAGCAGAACCAGTTTGGATAATATTTTCAAATGACATGGTAATTAAATTGAAAAATGAACTTATTGTGAATAGTTACAAAACAATTGATGGTAGAGGTGCTAAAGTTGAAATTGGAAATGGACCATGTATTACAATACAGGGTGTTAGTCATGTGATTGTGCATGGTATTAGTATTCATGATTGTAAACCAAGTAATCCTGGTATGGTTAGGAGTAGTATTGAACATGTTGGTTATCGACAAGGTTCTGATGGTGATGGTATAAGTGTTTTTGCTTCTTCTAATATTTGGATTGATCATTGCTACTTGGCAAGATGTACTGATGGACTTACTGATGTTACCCATGCCTCAACTCTTGTCACTATCTCAAATAATTACTTCACTCAGCATGACAAAGTGATGCTGCTTGGACACAACGATGATTACAGTGCTGATAGAGTAATGAAAGTAACAGTAGCTTTCAATCGCTTTGCCAGTGGCCTAATAGAAAGAATGCCAAGGGTAAGATTTGGTTATGCCCATGTTGTAAACAACCGATACGATGAGTGGATCATGTATGCCATTGGTGGTAGTGCTGACCCTACCATTTTCAGTCAAGCAAATTACTTCATAGCTTCAAAAAATTCTAATGCAAAACAGGTTACAAAGAGAGAAACCGATGGAAAATGGAAAAATTGGAAATGGAGGACTTATGGAGATGAATTCTTAAATGGTGCTTATTTTGTACCATCTGGTTATGGAAGTTGTACCCCATTATATTCATCATCTCAAAACTTTGTTGCTGCTAAGGCATCCATGGTGCCTTTATTAACACTCAACGCAGGACCTCTTGATTGTGTTGCTGACAAAGCATGTTAA 1230 0.3626 MATLINFIILLHLISLCLILPTLAKNSDSKNDYNNDLLDNIPTPSYSNNIPNSNTPQNVAVMNTIDSCWRSNSNWVSNRQSLADCAIGFGKDAIGGKYGEIYEVTDPSDDPINPKKGTLRYGVIQAEPVWIIFSNDMVIKLKNELIVNSYKTIDGRGAKVEIGNGPCITIQGVSHVIVHGISIHDCKPSNPGMVRSSIEHVGYRQGSDGDGISVFASSNIWIDHCYLARCTDGLTDVTHASTLVTISNNYFTQHDKVMLLGHNDDYSADRVMKVTVAFNRFASGLIERMPRVRFGYAHVVNNRYDEWIMYAIGGSADPTIFSQANYFIASKNSNAKQVTKRETDGKWKNWKWRTYGDEFLNGAYFVPSGYGSCTPLYSSSQNFVAAKASMVPLLTLNAGPLDCVADKAC* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0844 409 PANTHER PECTATE LYASE 16-RELATED 49 407 - -
Mtr2g0844 409 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Mtr2g0844 409 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Mtr2g0844 409 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Mtr2g0844 409 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Mtr2g0844 409 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Mtr2g0844 409 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Mtr2g0844 409 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Mtr2g0844 409 PRINTS Pollen allergen Amb family signature 380 403 IPR018082 -
Mtr2g0844 409 Gene3D - 62 402 IPR012334 -
Mtr2g0844 409 Pfam Pectate lyase 142 327 IPR002022 -
Mtr2g0844 409 PANTHER PECTATE LYASE 18-RELATED 49 407 IPR045032 GO:0030570
Mtr2g0844 409 SUPERFAMILY Pectin lyase-like 62 400 IPR011050 -
Mtr2g0844 409 SMART amb_all 136 333 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0844 Mtr-Chr2 8567418 8569583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0844 43 409 Polysaccharide Lyase AT4G22080 68.392 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0844 K01728 - gmx:100803229 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0844 2 8567418 8569583 Mtr2g0844 2 8567418 8569583 ECH