Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0792 ATGATGCAACCAGGACACGGCATGGCTCCTCCCACCATGGGCCAACAGCCACCGCAACAATACCAACAGCCACCACCACAGCAGCCGTACGTCATGATGCAACCACAACAACCGCCGGCTATGTGGGCGGCCCAATCCGCTCAGCCACCTCAGCAGCCCGCCAGCGCTGATGAGGTCCGTACTCTCTGGATCGGTGATTTGCAGTACTGGATGGATGAGAATTATCTCTATACCTGCTTTGGTAACACAGGCGAGTTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCAGAAGGTTATGGTTTTATTGAGTTTAATACTCGTGCCACTGCTGAGAGAGTGCTTCAGACATACAACGGAACTATTATGCCGAATGGTGGTCAGAACTACAGATTGAACTGGGCAACTTTCAGTGCTGGGGAAAGGTCGTCGAGACAGGACGATGGTCCTGACCATACCATTTTTGTTGGTGATTTGGCTGCGGATGTTACTGATTACCTTCTTCAGGAGACTTTTAGGGCTCGTTATAACTCTGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTTACCGGTAGGTCTAAGGGTTATGGTTTTGTGAGATTTGCTGATGAGGGTGAACAGATGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCCATGAGGATTGGTCCAGCCACTAATAAAAACCCTGCTGCCACCACTCAGCCGAAAGCTTCGTATAACCCTAGTGGCGGACAAAGCGAGAATGATCCCAATAACACAACTATTTTTGTTGGCAACTTGGATCCAAATGTCACCGACGATCATCTGAGGCAAGTTTTCACCCAATATGGTGAACTAGTACATGTGAAGATTCCATCAGGCAAGCGATGTGGGTTTGTCCAATTTTCGGACAGGAGCTGTGCAGAAGAGGCAATACGTGTTTTGAATGGAACTTTATTGGGTGGACAAAATGTTCGCCTTTCATGGGGACGCACTCCTTCAAACAAACAGACTCAGCAAGATCCAACCCAGGGTGGTTACCCTGCTGCTGGTGGATATTACGGCTATGCCCAGGGTGGTTATGAGAATTATGGTTATGCTGCTCCTCCTGCTGGACAGGATCCCAATGTGTATGGAAGTTATCCGGGGTATCCTGGTTACCAACACCCACAGCAGCAACAACAGCAAATGGGATATAGCTAA 1206 0.4826 MMQPGHGMAPPTMGQQPPQQYQQPPPQQPYVMMQPQQPPAMWAAQSAQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQDPTQGGYPAAGGYYGYAQGGYENYGYAAPPAGQDPNVYGSYPGYPGYQHPQQQQQQMGYS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0792 401 MobiDBLite consensus disorder prediction 1 57 - -
Mtr2g0792 401 CDD RRM3_NGR1_NAM8_like 260 331 - -
Mtr2g0792 401 MobiDBLite consensus disorder prediction 387 401 - -
Mtr2g0792 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 333 IPR000504 GO:0003723
Mtr2g0792 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 127 IPR000504 GO:0003723
Mtr2g0792 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 326 IPR000504 GO:0003723
Mtr2g0792 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 220 IPR000504 GO:0003723
Mtr2g0792 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 397 - -
Mtr2g0792 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 140 IPR000504 GO:0003723
Mtr2g0792 401 MobiDBLite consensus disorder prediction 228 260 - -
Mtr2g0792 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 234 IPR000504 GO:0003723
Mtr2g0792 401 MobiDBLite consensus disorder prediction 39 55 - -
Mtr2g0792 401 MobiDBLite consensus disorder prediction 234 260 - -
Mtr2g0792 401 MobiDBLite consensus disorder prediction 376 401 - -
Mtr2g0792 401 MobiDBLite consensus disorder prediction 329 346 - -
Mtr2g0792 401 CDD RRM1_SECp43_like 61 141 - -
Mtr2g0792 401 SUPERFAMILY RNA-binding domain, RBD 245 361 IPR035979 GO:0003676
Mtr2g0792 401 SMART rrm1_1 156 230 IPR000504 GO:0003723
Mtr2g0792 401 SMART rrm1_1 262 329 IPR000504 GO:0003723
Mtr2g0792 401 SMART rrm1_1 61 136 IPR000504 GO:0003723
Mtr2g0792 401 CDD RRM2_SECp43_like 154 233 - -
Mtr2g0792 401 MobiDBLite consensus disorder prediction 329 348 - -
Mtr2g0792 401 MobiDBLite consensus disorder prediction 17 33 - -
Mtr2g0792 401 Gene3D - 11 145 IPR012677 -
Mtr2g0792 401 Gene3D - 146 241 IPR012677 -
Mtr2g0792 401 Gene3D - 242 368 IPR012677 -
Mtr2g0792 401 SUPERFAMILY RNA-binding domain, RBD 146 241 IPR035979 GO:0003676
Mtr2g0792 401 SUPERFAMILY RNA-binding domain, RBD 35 139 IPR035979 GO:0003676
Mtr2g0792 401 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 19 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0792 Mtr-Chr2 8053487 8057383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0792 31 340 Eukaryotic Initiation Factors Gene Family AT4G34110 27.358 1.11e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0792 - - gmx:100794675 564.303