Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0673 ATGGCTATAATCCGCAACATAATAGAAGACATGAGATCAAGATCTCAAAGGGTGGTGGTGGCGGCGGAGAAGGAAGAGAAAGTGGCGGTTGGTGACAGTTTACGGCAGAGTTGTTGGGCTAACATGCCACAAGAGCTTCTCCGGGAGGTTCTTCTCCGAATTGAGGCGTCGGAGGACACGTGGCCGCCGAGGAAGAACGTTGTTGCTTGTGCTGGAGTGTGTAGGAGTTGGAGAGTTATCACTAAAGAGATTGTTAAAAAACCTGAAATTTCTGCTATGATCACTTTCCCCATTTCTGTTAAACAGCCTGGTCCAAGGGAGAATCTCCTTCAATGCTTTATAAAGCGCAACCGGTCCACTCAAACATATTATTTGTTTCTCAGTTTAACTAGTTCGCTAGGTGATGATGGGAAGTTCCTTCTGGCTGCACGCAAATGTAGACGTCCTACATGCACAGATTATATCATCTCTCTAGACGCAGATGATATGTCCAGGGGAAGCAACAACTATGTTGGGAAATTGAGATCAAATTTCCTCGGAACAAAGTTCACAATCTATGACGGCCAGCCACCTCATGCAGGAGCAAAATTTACTAAAAGTCGTTCTACTAGGCTGGTGAATCTAAAGCAGGTTTCACCCAAGGTCCCAACAGGCAACTATCCAGTGGCTCACATCTCATATGAATTAAATGTGCTAGGCTCTAGGGGGCCAAGGAGAATGCATTGTGTCATGGATTCCATTCCATCCTCTTCAATCGAACCAGGTGGCGTAGCTCCTACACAAACTGAGTTTTCTCTAAACAACATAGAAATGTTTCCCTTGTTTCCTTTTTTCCGATCAAAATCAAATCGTGTGGTAGAGAACTCTCTATCCGGACCTCTTGTTGGTGATAAAAAAGATGGTATGCTTGTGTTGAAAAACAAGGCTCCAAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTGGTGGCTTCCGCAGAAAATGGAACAGCTGGACCGGAACACGATAAGATTATTCTGCAATTTGGGAAAGTTGGGAAGGATTTGTTTACAATGGATTTCCGATACCCTATTTCGGCGTTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAA 1182 0.4467 MAIIRNIIEDMRSRSQRVVVAAEKEEKVAVGDSLRQSCWANMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRSWRVITKEIVKKPEISAMITFPISVKQPGPRENLLQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARKCRRPTCTDYIISLDADDMSRGSNNYVGKLRSNFLGTKFTIYDGQPPHAGAKFTKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPFFRSKSNRVVENSLSGPLVGDKKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGTAGPEHDKIILQFGKVGKDLFTMDFRYPISAFQAFAICLSSFDTKIACE* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0673 393 PRINTS Tubby superfamily signature 154 170 IPR000007 -
Mtr2g0673 393 PRINTS Tubby superfamily signature 170 194 IPR000007 -
Mtr2g0673 393 PRINTS Tubby superfamily signature 219 246 IPR000007 -
Mtr2g0673 393 PRINTS Tubby superfamily signature 305 322 IPR000007 -
Mtr2g0673 393 PRINTS Tubby superfamily signature 323 339 IPR000007 -
Mtr2g0673 393 PRINTS Tubby superfamily signature 350 369 IPR000007 -
Mtr2g0673 393 PRINTS Tubby superfamily signature 371 393 IPR000007 -
Mtr2g0673 393 ProSitePatterns Tub family signature 1. 323 336 IPR018066 -
Mtr2g0673 393 SUPERFAMILY F-box domain 34 82 IPR036047 GO:0005515
Mtr2g0673 393 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 393 - -
Mtr2g0673 393 PANTHER TUBBY-RELATED 4 393 - -
Mtr2g0673 393 ProSitePatterns Tub family signature 2. 378 393 IPR018066 -
Mtr2g0673 393 Pfam F-box domain 39 88 IPR001810 GO:0005515
Mtr2g0673 393 Gene3D Tubby Protein; Chain A 95 393 IPR025659 -
Mtr2g0673 393 SUPERFAMILY Tubby C-terminal domain-like 88 393 IPR025659 -
Mtr2g0673 393 Pfam Tub family 100 388 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0673 Mtr-Chr2 6806445 6811937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0673 12 393 TUB Transcription Factor Family AT2G47900 71.615 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mtr2g0673 Tub 3.2e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0673 K19600 - gmx:100778346 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0673 2 6806445 6811937 Mtr2g0673 2 6806445 6811937 ECH