Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0662 ATGGCGAAACTGTCGAAGCAACAACCTTCTTCCGACGAAGAACCGGTGAACTCTTTGTCGGAGGAAGAGCAAGTGAATGAAGAGATCAACGAAGAAGAAGATCAAGAGGAGTTGGAAGCTGTTGCTCGTGCTGTTAGTTCCGATGATGATGATGAAGTCGCTGGGGAAAATCCTCCGGATTCTGATGCAGATGTTGCTGGTGAAGATGGTGATGATGATGGAGAGGGAGAAGGTGGTCCTGAAATAAGCAAACGCGAGAAGGAGAGATTGCGAGAAATGCAAAAACTGAAGAAACAGAAAGTTCAAGAGATATTAGATGCTCAAAATGCGGCCATTGAAGCTGACATGAATAATAGAGGAAAGGGGCGATTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCCCATTTTGCAAAAGGTGACCAATCATCTCAAAAGAAGTCAAAAGGAAGTGGTCGCCATGCGTCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTGAAAGGAGAAGAAGACGGTGTTTCAAACACTCGTCTGGTGACACAACCATCATGTATTCAAGGGAAGATGAGGGATTACCAATTGGCTGGACTAAACTGGCTCATTCGATTGTATGAAAATGGAATAAATGGAATTCTGGCCGATGAGATGGGGCTTGGTAAAACATTGCAAACTATATCTTTAATGGGTTACTTGCATGAGTTCAGAGGAATTAAAGGCCCTCATATGGTGGTTGCCCCAAAATCAACTCTTGGAAATTGGATGAATGAGATTCGTCGCTTTTGTCCTATTCTGCGTGCCGTAAAATTCCTTGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGACTTATTGGTTGCTGGAAAGTTTGACGTTTGCGTTACAAGTTTTGAAATGGCTATCAAGGAGAAGTCCACTTTACGTCGATTTAGTTGGCGCTACATAATTATCGATGAAGCTCATAGAATCAAGAACGAGAATTCATTGCTCTCTAAAACAATGAGGATTTACAATACAAACTATCGCCTCCTTATCACTGGTACACCGCTTCAGAATAATCTTCATGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTGCAGCAATTACACAAGGTCCTCCGGCCATTTCTTCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAAGAAACTATTCTTAAAGTGGGCATGTCACAATTGCAGAAACAATATTATAAAGCATTACTGCAGAAGGATCTCGAGGTTGTCAATGCTGGCGGAGAACGGAAGCGTCTCCTGAATATAGCTATGCAACTGCGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCTTATACAACAGGAGATCATCTCATTACCAGTGCTGGTAAAATGGTTCTTTTGGATAAGTTGCTTCCTAAATTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGTTAGACATACTTGAAGATTATTTGATGTTCCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGTGATGCCTCCATTGATGCTTTCAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCCGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTCGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAAGATCGTGCTCATAGGATAGGTCAGAAGAAAGAAGTTCAAGTTTTCCGTTTTTGCACTGAGTATACGATTGAGGAGAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAACAGGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTACTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGACGAGGATATTGATAGAATTATTGCCAAAGGAGAAGAGGCAACTGCGGAGCTTGATGCCAAGATGAAGAAATTTACAGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTATACGATTTTGATGATAAGGATGAGAACAAGTTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAACCAACAAGAAGGGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACCATGCGACAAGGTGGTCCTTCTAAACCAAAGGAGCCCCGCATTCCTAGAATGCCACAGTTGCATGATTTCCAGTTTTTCAACACACCGAGATTGAGTGAGTTGTATGAAAAGGAAGTACGCTATCTCATGCAAACCCATCAGAAGAATCAGGTGAAGGACTCGATAGATGTTGATGAACCAGAAGAGGTAGGAGATCAATTGACCGCTGAAGAGATGGAAGAAAAGGAGCGCCTGCTAGAAGAGGGATTTTCATCATGGAGCCGAAAAGATTTTAACACCTTCCTCAGGGCCTGTGAGAAATATGGTCGAAATGATATACAAAGTATTGCCTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATCAAAAACATCGAGAGGGGGGAGGCTAGAATTTCTCGGAAGGATGAGATCATGAAAGCTATCGGAAAGAAATTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGGTACAGTATGGGCAAAACAAAGGGAAGCTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCGTTTCGAACATCACCCTTGTTTAGATTTGATTGGTTTGTTAAGTCTCGCACAACACAGGAACTTGCAAGGAGGTGCGACACCCTCATTCGGTTGGTAGAAAAGGAAAACCAAGAATACGATGAGAGGGAGAGACAAGCTCGCAAAGAAAAGAAACTTGCCAAGAACATGACTCCGACAAAGCGGGCTTTGGCAAGACAAACTGAGAGTCCATCTTCTGCTAAGAAGCGGAAGCAGTCAACTATGGATGATTATGCTAGCACGGGGAAGAGGAGAAAATAA 3198 0.4196 MAKLSKQQPSSDEEPVNSLSEEEQVNEEINEEEDQEELEAVARAVSSDDDDEVAGENPPDSDADVAGEDGDDDGEGEGGPEISKREKERLREMQKLKKQKVQEILDAQNAAIEADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKSKGSGRHASKVTEEEEDEEYLKGEEDGVSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREDLLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDKDENKFDFKKIVSENWVEPTRRERKRNYSESEYFKQTMRQGGPSKPKEPRIPRMPQLHDFQFFNTPRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDQLTAEEMEEKERLLEEGFSSWSRKDFNTFLRACEKYGRNDIQSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPTKRALARQTESPSSAKKRKQSTMDDYASTGKRRK* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0662 1065 Pfam SLIDE 898 1008 IPR015195 GO:0003677|GO:0005634|GO:0006338
Mtr2g0662 1065 ProSiteProfiles SANT domain profile. 840 892 IPR017884 -
Mtr2g0662 1065 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 753 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mtr2g0662 1065 SMART helicmild6 522 606 IPR001650 -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 139 172 - -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 1012 1029 - -
Mtr2g0662 1065 Gene3D - 929 1032 - -
Mtr2g0662 1065 SUPERFAMILY Homeodomain-like 896 1018 IPR009057 -
Mtr2g0662 1065 Coils Coil 19 39 - -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 77 95 - -
Mtr2g0662 1065 SMART ultradead3 187 379 IPR014001 -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 142 163 - -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 1 95 - -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 16 38 - -
Mtr2g0662 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 406 IPR027417 -
Mtr2g0662 1065 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 368 IPR014001 -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 749 770 - -
Mtr2g0662 1065 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 647 IPR001650 -
Mtr2g0662 1065 Pfam Helicase conserved C-terminal domain 494 606 IPR001650 -
Mtr2g0662 1065 Pfam SNF2-related domain 204 471 IPR000330 GO:0005524|GO:0140658
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 1012 1065 - -
Mtr2g0662 1065 CDD SF2_C_SNF 492 617 - -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 1043 1065 - -
Mtr2g0662 1065 Gene3D - 192 407 IPR038718 -
Mtr2g0662 1065 Gene3D iswi atpase 896 928 - -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 51 76 - -
Mtr2g0662 1065 MobiDBLite consensus disorder prediction 1 15 - -
Mtr2g0662 1065 Gene3D ISWI, HAND domain 742 841 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mtr2g0662 1065 SMART sant 943 1004 IPR001005 -
Mtr2g0662 1065 SMART sant 841 890 IPR001005 -
Mtr2g0662 1065 Coils Coil 83 110 - -
Mtr2g0662 1065 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 10 1065 - -
Mtr2g0662 1065 Coils Coil 998 1029 - -
Mtr2g0662 1065 SUPERFAMILY Homeodomain-like 844 894 IPR009057 -
Mtr2g0662 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 689 IPR027417 -
Mtr2g0662 1065 Pfam HAND 754 836 IPR015194 GO:0003677|GO:0006338|GO:0031491
Mtr2g0662 1065 CDD SANT 844 888 IPR001005 -
Mtr2g0662 1065 Gene3D - 412 704 IPR027417 -
Mtr2g0662 1065 Gene3D - 842 895 - -
Mtr2g0662 1065 PANTHER SNF2/RAD54 HELICASE FAMILY 10 1065 - -
Mtr2g0662 1065 CDD DEXHc_SMARCA1_SMARCA5 188 408 IPR044754 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0662 Mtr-Chr2 6684149 6692991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0662 212 633 RAD5 or RAD16-like Gene Family AT1G02670 27.921 4.93e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr2g0662 SNF2_N 1.2e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0662 K11654 - gmx:100809750 1891.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0662 2 6684149 6692991 Mtr2g0662 2 6684149 6692991 ECH
Mtr4g4335 4 57391413 57399645 Mtr2g0662 2 6684149 6692991 PCT