Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0652 ATGTCAACCTCTAGAACCTCAAACACTTCCCTTAAAGGACATGATCATCATCACAATCAAATCCAAATAAATTTATCTTTACTTCAACGAAACACTTCGGTTTGTGGCGAAAAAAGAGGCAGAAAAAAGCAAGCAGAACCAGGTAAGTTTCTTGGTGTAAGGAGAAGACCTTGGGGTAGATATGCTGCTGAAATTAGAGATCCTGCAACTAAAGAAAGACATTGGTTAGGAACATTTGATACTGCTCAAGAAGCTGCTTTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTAGCAATGCTAGAACAAATTTCATATATCCTTCTTCTTCTTCTGATGAAGATGATACCAATTTTCACAATGTTGTTGATCCTCCTTTTGATGTTCAAAGAACACAACCAATTACCAATCAAAATACCCTCTCTCAGCTTGATTCTAATTCTCATTTGAACAATGACAATTTGTTATTCTCTAATGATTATAATAACTCAGGCTATCTTGAAAGCATTGTTCCTGTTAATTGCTTCAAACCTATTTCCAACACCAACAATTCAAACTTTGATGATCATAGTAGTAATGCAAGTGATTCAAGTGAACACCAAAATGTTGTTGATTCCATTTGCACAACAAACTTCATGCATGGTCAATCATTTTTTGACTACACTCCATTCTCTCAAGAAGCATATAACATTAACACAAGTAATTATAGTGAAGGATTATGGGATTGCAATTACAATGAACTTTCAGCTATTTTTAACCAACCACCAAGGAGTGAAATTCCAAGCTATGGACTAATGACAACTCAAGATGTCTCTTCAACTACCTATTCTTCTCATTCATACTCTCCTTTCGGCGATGTCGACATGGGAATGGGATACTCACTCTTCTGA 891 0.3591 MSTSRTSNTSLKGHDHHHNQIQINLSLLQRNTSVCGEKRGRKKQAEPGKFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAQEAAFAYDRAALSIKGSNARTNFIYPSSSSDEDDTNFHNVVDPPFDVQRTQPITNQNTLSQLDSNSHLNNDNLLFSNDYNNSGYLESIVPVNCFKPISNTNNSNFDDHSSNASDSSEHQNVVDSICTTNFMHGQSFFDYTPFSQEAYNINTSNYSEGLWDCNYNELSAIFNQPPRSEIPSYGLMTTQDVSSTTYSSHSYSPFGDVDMGMGYSLF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0652 296 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Mtr2g0652 296 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Mtr2g0652 296 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 296 - -
Mtr2g0652 296 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Mtr2g0652 296 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Mtr2g0652 296 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Mtr2g0652 296 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 296 - -
Mtr2g0652 296 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Mtr2g0652 296 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Mtr2g0652 296 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0652 Mtr-Chr2 6579841 6581204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0652 20 128 AP2-EREBP Transcription Factor Family AT5G18560 59.664 4.95e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr2g0652 AP2 7.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0652 - - mtr:MTR_2g019750 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4349 4 57524822 57526025 Mtr2g0652 2 6579841 6581204 PCT