Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0606 ATGGGGGATCTTGAAAAAATGGGAAGAGAACTCAAATGTCCAATCTGTCTGGGTTTACTTCATTCCGCAGTTTCACTCACCTGCAATCATCTTTTCTGCAACTCTTGTATATTTAAGTCTATGAAATCTGCTTCTTCTTGTCCTGTTTGTAAAATTCCCTTCACTCGTCGAGAGGTTCGTCCTGCTCCTCACATTGACAACTTGGTCACCATCTACAAAAACATGGAAGCTGCTTCCGGCATCAATTTATTCGGTACTCAAAATCCAACTGCTACCAAATCACCAGATGATGAAATGCAAGGTGGAGGTGATGCTGAGTCTGGTGAGAAGGGAATTGGAGGCACTCATGAAAATCATGCTGAGGAGGAAAAAACACCCACAAGAAAGAGGTCCAGGAAGAAACTTAAGACAAGCACAATAAGCTCGGAGAAGCTAAAGACTAGCAGGAAAAGTCCGGCTTCTAACCGTGCAAAGCCTTCTTTTCCGGCTAAGAAAAGGGTTCAGGTTCCACAAGACATTCTTTCGGAAACTCCACTAAGGAATTTGAAGACAGGAGGCTCTATTACTCAAGTTAACAAAGAGGGAACACAAGAGGCTTCAATTAAGAGAAATGTAAGTGCAATTGGAAGTGAAAAAAGGGATCAGGTGAAAGAACCATTCTTTTGGTTAAGAGAGGAGCAAGATGGTGAAAGGTTAAGTGCACAAACTGACGAGGATCAAATTATTGAAGGTCCAACACCAATTCCTCCTTCATTCAGTGACCTCAAAGACGCTGATGATGAAAGCCCTTTAAAACAAGCTCCATCAGATGAGGTGCAAAATAAACCATCTGTTGATTTATTTGATAGCGAGTTTTTTGAATGGACGCAAAAGCCATGCTCCCCTGAATTATTTTCAAGTCCCATCAAAACGCAGGTGCAGGTTGAAGATACTGATGAAATTGATGAAAATATAGAGGAATGGGTGGCGGCGTTGCAAGAGAAACAAACAAGTGTTGATGCTTGTAATACCAACTTTGAGAATCCCAATGGTAATCAATTGGCTGAAGCGTTGCTACCAGGCTTGTCCTCTGAAATTAGAAGTTCTGATGATCTAAATGGAAAAAAGAATTCTACAAAGAGAAGCAGGAAGGCTAGAGAAAAATCTAGGCAAGACCATATTAGGGAACTAAATTGTCTGAGTGATGAAATTAATATGGATGCAGATATAACATCAAAAGTCATTGAGGAGCAATCATTGGACTACAAGCACAAAGCCTCTAACCTGAAAAAGTCTAATAAAAGGGGGAAGAAGGTTTCTTTTGTTACTAGTACAGAATCAACACCTCCAATTGCTTGTACAGTCTCCAATATATTAGGAGTTCAAAACATTGGTGATAGGAAGACAGCTAAGAATTCATATACATCAGAATCTAAACAAGATAATGAGATGCAATTTCCTGAGAAGATTGCTGGAAAAAGGCAGGTAAGAAGATCTGGAAAACAAAGGCTGGATGTTGTGGATGACCCACCTGAGGATTTAACTTCAGTGCAAAACCAATGCAAAGAGCTTGCTGGATCTGCTTCATCCAGTTTAAGACTGCAAATGGATAGTAATAGAAACACTGTCAATACTAGAAAAAGAAAAAGCAGTTTGTCAAGAAAATCCACGCCTTCTGTTACAGAAAGGAAGAGTACTAAAAAGTCAAAACTTTCCCCTGAATTCATCTCTAGGACTAAAAATGGTGAGGAAATTAAGCCTACTGGAAGTACCAATCCAGGTACTGATGTCAGGCCTTTGAATGATTCATCCAAAGAGAAACACTGTAGTTTGACGGATCAACCGGTTTTAAGGAAATGTGTGAGCCATGCCAAAGAGTATCAATGTGCTTTCTGTCTCTCGTCAGAAGAATCAGAGGCTTCTGGTCCAATGGTGCACTATTTTGATGAAAAACCTGTAACTGCTGATTTTGAAGGAGGACCTAAAGTCATACATTGTCACAGGAATTGCACAGAATGGGCCCCAAATGTGTATTTTGAAGATGATAATGCAATAAATCTTGAAGCAGAAATAAGTAGAAGCCGGAGAATCAAATGTGGTTTTTGTGGACTTAAAGGAGCTGCACTCGGTTGCTTTGAGAAAAGTTGTCGCAGGAGCTTTCATGTTCCTTGTGCTAAGTGGACTCCTGAGTGTCGATGGGATATGGAAAATTTTGTCATGTTATGCCCTCTCCATGCTCCCTCCTTGTTGCCGTGTGAAAGTTCAGGATCCCAACACAATAGCAAAAAACATACAGCGAAGAAGGTTAAAATCTGTAGCCGCAAACATGACACTACTAGCCAAAGTCAGATTGCTCATGGTTCTCACAAGAAAATTGTGCTGTGCTGTTCAGCTCTGTCCGTGCAGGAGAAGGAAGTGGTTTCCGAATTTGAAAGAGTGTCGAAGGTTACAGTTCTGAAAACTTGGGATTCAGGTGTTACCCATGTAATAGCATCAACAGATGAAAATGGGGCATGCAGAAGGACTCTCAAAGTATTGTTGGGTATTCTGGAGGGAAAGTGGATTCTCAGCATTGAGTGGATCAAAGCTTGCATGAAAGAAACAAGACCTGTTGATGAAGAGCGTTATGAAGTTAATGTCGACATCCACGGAATTAAGGATGGTCCCCGTCTTGGAAGATTAAGAGTAGTGAACAAGCAACCAAAGCTTTTTGATGGCTACAAGTTCTATTTCATGGGCGATTTTATCCCTTCATACAAGGGCTATCTGCAAGACCTTGTGATCGCTGCTGGAGGGATAGTTCTGCACAGAAAACCAGTGTCAGCTGACCAAAATGAAATACTGCCTACTATGAATCAACACCGAACCCTCATAATCTATAGTCTTGAGCTTCCTGCTAAATCCAATCCTTTGGAAAAGGATGCAATTTTTAGCCAAAGGCGATGTGACGCAGAGGCTTTGGCAAGGCCTACTTGTTCAAAGGTTGCAAGCAATACATGGATTCTGAATTCAATTGCTGGCTGCAAGCTGCAAAGCCTTGCTCAATAA 3027 0.411 MGDLEKMGRELKCPICLGLLHSAVSLTCNHLFCNSCIFKSMKSASSCPVCKIPFTRREVRPAPHIDNLVTIYKNMEAASGINLFGTQNPTATKSPDDEMQGGGDAESGEKGIGGTHENHAEEEKTPTRKRSRKKLKTSTISSEKLKTSRKSPASNRAKPSFPAKKRVQVPQDILSETPLRNLKTGGSITQVNKEGTQEASIKRNVSAIGSEKRDQVKEPFFWLREEQDGERLSAQTDEDQIIEGPTPIPPSFSDLKDADDESPLKQAPSDEVQNKPSVDLFDSEFFEWTQKPCSPELFSSPIKTQVQVEDTDEIDENIEEWVAALQEKQTSVDACNTNFENPNGNQLAEALLPGLSSEIRSSDDLNGKKNSTKRSRKAREKSRQDHIRELNCLSDEINMDADITSKVIEEQSLDYKHKASNLKKSNKRGKKVSFVTSTESTPPIACTVSNILGVQNIGDRKTAKNSYTSESKQDNEMQFPEKIAGKRQVRRSGKQRLDVVDDPPEDLTSVQNQCKELAGSASSSLRLQMDSNRNTVNTRKRKSSLSRKSTPSVTERKSTKKSKLSPEFISRTKNGEEIKPTGSTNPGTDVRPLNDSSKEKHCSLTDQPVLRKCVSHAKEYQCAFCLSSEESEASGPMVHYFDEKPVTADFEGGPKVIHCHRNCTEWAPNVYFEDDNAINLEAEISRSRRIKCGFCGLKGAALGCFEKSCRRSFHVPCAKWTPECRWDMENFVMLCPLHAPSLLPCESSGSQHNSKKHTAKKVKICSRKHDTTSQSQIAHGSHKKIVLCCSALSVQEKEVVSEFERVSKVTVLKTWDSGVTHVIASTDENGACRRTLKVLLGILEGKWILSIEWIKACMKETRPVDEERYEVNVDIHGIKDGPRLGRLRVVNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVIAAGGIVLHRKPVSADQNEILPTMNQHRTLIIYSLELPAKSNPLEKDAIFSQRRCDAEALARPTCSKVASNTWILNSIAGCKLQSLAQ* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 506 534 - -
Mtr2g0606 1008 SMART BRCT_7 894 1001 IPR001357 -
Mtr2g0606 1008 SMART BRCT_7 778 861 IPR001357 -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 174 196 - -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 141 155 - -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 576 592 - -
Mtr2g0606 1008 SMART ring_2 13 50 IPR001841 -
Mtr2g0606 1008 SMART ring_2 692 738 IPR001841 -
Mtr2g0606 1008 CDD BRCT_Bard1_rpt1 785 864 - -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 463 601 - -
Mtr2g0606 1008 Pfam PHD-like zinc-binding domain 660 738 - -
Mtr2g0606 1008 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 358 385 - -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 475 503 - -
Mtr2g0606 1008 SUPERFAMILY BRCT domain 785 878 IPR036420 -
Mtr2g0606 1008 Gene3D BRCT domain 893 1000 IPR036420 -
Mtr2g0606 1008 SUPERFAMILY BRCT domain 894 1006 IPR036420 -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 84 196 - -
Mtr2g0606 1008 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 3 1006 - -
Mtr2g0606 1008 Gene3D BRCT domain 781 887 IPR036420 -
Mtr2g0606 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 81 IPR013083 -
Mtr2g0606 1008 SMART PHD_3 691 739 IPR001965 -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 226 277 - -
Mtr2g0606 1008 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Mtr2g0606 1008 Pfam BRCA1 C Terminus (BRCT) domain 810 858 IPR001357 -
Mtr2g0606 1008 ProSiteProfiles BRCT domain profile. 819 871 IPR001357 -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 553 574 - -
Mtr2g0606 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 740 IPR013083 -
Mtr2g0606 1008 ProSiteProfiles Extended PHD (ePHD) domain profile. 619 739 IPR034732 -
Mtr2g0606 1008 CDD ePHD 622 738 - -
Mtr2g0606 1008 SUPERFAMILY RING/U-box 4 74 - -
Mtr2g0606 1008 MobiDBLite consensus disorder prediction 99 128 - -
Mtr2g0606 1008 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Mtr2g0606 1008 ProSiteProfiles BRCT domain profile. 892 1008 IPR001357 -
Mtr2g0606 1008 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 3 1006 IPR031099 GO:0006281|GO:0006974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0606 Mtr-Chr2 6074288 6080099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0606 8 63 RAD5 or RAD16-like Gene Family AT5G22750 37.931 4.67e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0606 K10683 - gmx:100804958 1274.23