Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0566 ATGGATTTTCCAAATGAATCCATGTCAGATTCTCCACAGAGAAAGATTGGAAGGGGAAAGATTGAGATCAAAAGGATTGAAAACACGACGAATCGTCAAGTAACTTTCTGCAAAAGAAGAAATGGTTTGTTGAAGAAAGCATATGAATTATCTGTTCTTTGTGATGCAGAAGTTGCTCTTATAGTCTTCTCTAGCCGTGGACGGCTCTATGAGTATGCTAATAACAGTGTCAAAGAGACTATTGCAAGGTACAAAAAAGCATGTTCAGATTCATCTGGCACTGGATCTGCTACTGAGGCTAATGCTCAGTTTTACCAGCAAGAGGCAGACAAATTGCGTGTGCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTTTGGGCTCTATGAATGCCAAGGAACTGAAAAATCTGGAGTCTAAATTAGAAAAAGGAATTAGTCGGATTCGTTCCAAAAAGAATGAGCTGTTATTTGCTGAAATTGAATACATGCAGAAGAGGCAGGAGATAGACTTGCACAATAACAACCAACTTCTGAGAGCAAAGATAGCTGAAAGTGAGAGGAACCATAGCCACCATAGCAATATTAATATGAGTATGTTGCCTGGAGGCACAAACTATGAACCTATGCAGTCTCAGAATCAGCAGCAGCAATATGAGTCTCGTGGATACTTTCAAGTTTCTGGATTACAATCCAGTAGTAGTCAAATGACTGCATTACAACCAAGTAGTCAGTATGCAAGACAAGACCACATGTCCCTTCAATTAGTTTGA 786 0.3944 MDFPNESMSDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKETIARYKKACSDSSGTGSATEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKELKNLESKLEKGISRIRSKKNELLFAEIEYMQKRQEIDLHNNNQLLRAKIAESERNHSHHSNINMSMLPGGTNYEPMQSQNQQQQYESRGYFQVSGLQSSSSQMTALQPSSQYARQDHMSLQLV* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0566 261 MobiDBLite consensus disorder prediction 190 224 - -
Mtr2g0566 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Mtr2g0566 261 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Mtr2g0566 261 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Mtr2g0566 261 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Mtr2g0566 261 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Mtr2g0566 261 MobiDBLite consensus disorder prediction 239 261 - -
Mtr2g0566 261 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Mtr2g0566 261 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Mtr2g0566 261 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Mtr2g0566 261 Coils Coil 102 129 - -
Mtr2g0566 261 ProSiteProfiles K-box domain profile. 102 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr2g0566 261 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Mtr2g0566 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 239 - -
Mtr2g0566 261 MobiDBLite consensus disorder prediction 197 224 - -
Mtr2g0566 261 Coils Coil 139 173 - -
Mtr2g0566 261 Pfam K-box region 99 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr2g0566 261 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Mtr2g0566 261 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 17 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0566 Mtr-Chr2 5588584 5596945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0566 14 261 MADS-box Gene Family AT3G58780 64.113 2.03e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr2g0566 K-box 3.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0566 K09264 - gmx:732595 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0566 2 5588584 5596945 Mtr2g0566 2 5588584 5596945 ECH
Mtr8g2978 8 40428423 40434577 Mtr2g0566 2 5588584 5596945 PCT