Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0549 ATGGAATCGATTTACATGGATGCAAGCCAAACAAGAAAGTTTGCTGTCAAACTGCGTTTGACCACTCCAAAACCACGTTTAAAGGTTTCTACCGGCAATGGAAGTCTTGATGTGGTTATGAATGTAAACGATGGCGCAAACAAAAAATGTGATGCCACAACCATTGATGATCATGTTCCTTTTTTGCAAAAGTTGGTAGCAGAAGTGGTGCGAACATTCTTCTTGATATTTGCTGGATGTGGTTCTGTGGTGGTGAACCTTAACAATGATAAAGTTGTGACACTTCCTGGAATTGCAATTGTTTGGGGACTTGTTGTTATGGTATTAGTCTATTCTATAGGTCATATCTCTGGTGCCCATTTCAATCCCGCGGTCACCATTGCTCACACTACAACCGGAAGGTTTCCATTGAAGCAGGTACCAGCTTATATAATTGCTCAGGTCGCTGGCTCAACACTTGCAAGTGAAGCTCTCAAACTCATATTCAGTGGCAAGGAAAATCAATTTGCAGGAACACTTCCGGCTGGTTTGGACCATCAAGCTTTTGTGGTCGAATTTATTATCACTTTCTACCTTATGTTCGTCATTTCTGGAGTTGCCACCGATAATAGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACAGTCATGCTAAATGTGTTGTTTGCAGGACCCATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGACCAGCTATTGTGCACCATGAATATAGAGGAATATGGATATATATGGTGTCACCTATTCTAGGAGCTTTGGCTAGTACATGGACCTACACTTTCCTCAGAATCACAAATAAGTCAGTTCGTGAGCTCACCAAGAGTTCTTCATTCCTTAGAGGCAAGGGAGCTGAGTGA 888 0.4245 MESIYMDASQTRKFAVKLRLTTPKPRLKVSTGNGSLDVVMNVNDGANKKCDATTIDDHVPFLQKLVAEVVRTFFLIFAGCGSVVVNLNNDKVVTLPGIAIVWGLVVMVLVYSIGHISGAHFNPAVTIAHTTTGRFPLKQVPAYIIAQVAGSTLASEALKLIFSGKENQFAGTLPAGLDHQAFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVMLNVLFAGPITGASMNPARSLGPAIVHHEYRGIWIYMVSPILGALASTWTYTFLRITNKSVRELTKSSSFLRGKGAE* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0549 295 TIGRFAM MIP: MIP family channel proteins 67 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0549 295 Pfam Major intrinsic protein 58 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0549 295 Gene3D Glycerol uptake facilitator protein. 33 286 IPR023271 -
Mtr2g0549 295 CDD MIP 63 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0549 295 PRINTS Major intrinsic protein family signature 63 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0549 295 PRINTS Major intrinsic protein family signature 102 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0549 295 PRINTS Major intrinsic protein family signature 139 158 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0549 295 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0549 295 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0549 295 PRINTS Major intrinsic protein family signature 252 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0549 295 ProSitePatterns MIP family signature. 120 128 IPR022357 -
Mtr2g0549 295 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 30 291 - -
Mtr2g0549 295 SUPERFAMILY Aquaporin-like 58 282 IPR023271 -
Mtr2g0549 295 PANTHER AQUAPORIN NIP2-1 30 291 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0549 Mtr-Chr2 5449175 5451904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0549 37 290 Major Intrinsic Protein MIP AT5G37810 54.231 2.60e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0549 K09874 - gmx:100812577 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2969 8 40346208 40348741 Mtr2g0549 2 5449175 5451904 PCT