Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0548 ATGGCTGATCCTTCATCAAGCAATGGAAACCATGAAATGGTTTTGAATGTAAATGGTGATGTTTCCCAAAAGTGTGATGAGTCATGCATCCAAGACTATGTGCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTAGGGACGTACTTCTTGATATTTGCAGGGTGTGCTGCTGTTGTGGTGAATCTTGACAATGACAAAGTAGTAACACATCCTGGGATCTCAATTGTTTGGGGCCTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCTTCCACCAAAAGGTTCCCGGTTAAGCAGGTACCGGCTTATATAATATCTCAAGTTCTTGGATCAACCCTTGCAAGTGGAACACTTAGGCTTATATTCAATGGCAAAGAAAACCATTTTTCAGGAACACTTCCAACTGGTTCTGATCTCCAGGCATTTGTGGTCGAATTCATAATCACTTTTTATCTTATGTTCGTCATATCTGGAGTGGCCACCGATGATAGAGCGATTGGTGAGTTGGCTGGACTTGCAGTTGGATCTACCGTGCTTCTAAATGTTATGTTTGCTGGGCCAATTACTGGAGCATCAATGAATCCTGCAAGGAGCTTAGGGCCTGCTATTGTGCACCATGAATATAGAGGAATATGGATATATTTGGTATCAACAACTCTTGGTGCCATAGCTGGTACATGGGCATATACTTTCATCCGCTACACAAACAAGCCAGTGCGTGAAATTAGTAAGAGTGCCTCTTTCCTTAAAGGAGTACAAAATGGTGGAGCTAAGTGA 822 0.4307 MADPSSSNGNHEMVLNVNGDVSQKCDESCIQDYVPLLQKLVAEVVGTYFLIFAGCAAVVVNLDNDKVVTHPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTKRFPVKQVPAYIISQVLGSTLASGTLRLIFNGKENHFSGTLPTGSDLQAFVVEFIITFYLMFVISGVATDDRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHHEYRGIWIYLVSTTLGAIAGTWAYTFIRYTNKPVREISKSASFLKGVQNGGAK* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0548 273 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0548 273 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0548 273 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0548 273 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0548 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0548 273 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0548 273 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0548 273 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Mtr2g0548 273 Pfam Major intrinsic protein 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0548 273 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0548 273 Gene3D Glycerol uptake facilitator protein. 8 260 IPR023271 -
Mtr2g0548 273 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
Mtr2g0548 273 SUPERFAMILY Aquaporin-like 33 257 IPR023271 -
Mtr2g0548 273 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0548 Mtr-Chr2 5444760 5447456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0548 34 267 Major Intrinsic Protein MIP AT5G37820 62.393 7.11e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0548 K09874 - gmx:100812577 473.396