Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0547 ATGGGTGATATTAGCAATGGAAATCTTGATGTGGTTATGAATATAAACGATGATGCTACCAAAAAATGTGACGACACAACCATTGATGATCATGTTCCTCTTTTGCAAAAGTTGGTAGCAGAAGTGGTGGGAACATTCTTCTTGATATTTGCTGGATGTGCTGCTGTGGTGGTGAACCTTAACAATGATAAAGTTGTGACACTTCCTGGAATATCAATTGTTTGGGGACTTGCTGTTATGGTATTAGTCTATTCTATAGGTCATATCTCTGGTGCTCATTTCAATCCCGCTGTCACCATTGCTCACACCACCACCGGAAGGTTTCCATTGAAGCAGTTGCCAGCTTATATAATTGCTCAGGTCGTTGGCTCAACACTTGCAAGTGGAGTTCTCAAACTTATATTCAGTGGCAAGGAAAATCAATTTGCAGGAACACTTCCAGCTGGTTCTGATCTTCAAGCTTTTGTGGTCGAATTTATTATCACTTTCTTCCTTATGTTCATCATTTCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACCGTTATACTAAATGTGCTGTTTGCGGGACCCATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGACCAGCTATTGTGCACCATGAATATAGAGGAATATGGATATATATGGTGTCACCTATTCTAGGAGCTTTGGCTGGTACATGGACCTACACTTTCCTCAGAATCACAAATAAGCCAGTTCGTGAGCTCACCAAGAGTTCTTCATTCCTCAAAGCAGTAAGCAAGGGAGCTGAGTGA 813 0.4182 MGDISNGNLDVVMNINDDATKKCDDTTIDDHVPLLQKLVAEVVGTFFLIFAGCAAVVVNLNNDKVVTLPGISIVWGLAVMVLVYSIGHISGAHFNPAVTIAHTTTGRFPLKQLPAYIIAQVVGSTLASGVLKLIFSGKENQFAGTLPAGSDLQAFVVEFIITFFLMFIISGVATDNRAIGELAGLAVGSTVILNVLFAGPITGASMNPARSLGPAIVHHEYRGIWIYMVSPILGALAGTWTYTFLRITNKPVRELTKSSSFLKAVSKGAE* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0547 270 CDD MIP 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0547 270 Pfam Major intrinsic protein 31 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0547 270 SUPERFAMILY Aquaporin-like 31 256 IPR023271 -
Mtr2g0547 270 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Mtr2g0547 270 Gene3D Glycerol uptake facilitator protein. 5 258 IPR023271 -
Mtr2g0547 270 TIGRFAM MIP: MIP family channel proteins 40 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0547 270 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0547 270 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0547 270 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0547 270 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0547 270 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0547 270 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0547 270 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 5 266 - -
Mtr2g0547 270 PANTHER AQUAPORIN NIP2-1 5 266 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0547 Mtr-Chr2 5439179 5441698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0547 20 267 Major Intrinsic Protein MIP AT5G37820 58.468 8.80e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0547 K09874 - gmx:100812577 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2968 8 40341097 40343356 Mtr2g0547 2 5439179 5441698 PCT