Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0546 ATGGCTGATCATTCATCAAGCAATGGAAACCATGAAACGGTTTTGAATGTAAATGGTGATGCCTCCCAAAATTGTGATGAGTCATGCATCCAAGACTATGTGCCCCTTTTGCAGAAGTTGGTAGCAGAGGTGGTAGGGACGTACTTCTTGATATTTGCAGGGTGTGCTGCTGTTGTGGTGAATCTTGACAATGACAAAGTAGTAACACATCCTGGGATCTCAATTGTTTGGGGCCTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCTTCCACCAAAAGGTTCCCGGTTAAGCAGGTACCGGCTTATATACTATCTCAAGTTCTTGGATCAACCCTTGCAAGTGGAACTCTTAGGCTTATATTCAATGGCAAAGAAAACCATTTTTCAGGAACACTTCCAACTGGTTCTGATCTCCAGGCATTTGTGGTCGAATTCATAATCACTTTTTATCTTATGTTCGTCATTTCTGGAGTGGCCACTGACAATAGAGCGATTGGTGAGTTGGCCGGACTTGCAGTTGGATCTACTGTGCTTCTAAATGTTATGTTTGCCGGGCCAATTACTGGAGCATCAATGAATCCTGCAAGGAGCTTAGGGCCTGCTATTGTGCACCATGAATATAGAGGAATATGGATATATTTGGTATCAACAACTCTTGGTGCCATAGCTGGTACATGGGCATATACTTTCATCCGCTACACAAACAAGCCAGTGCGTGAAATTAGTAAGAGTGCCTCTTTCCTTAAAGGAGTACAAAATGGTGGAGCTAAGTGA 822 0.4343 MADHSSSNGNHETVLNVNGDASQNCDESCIQDYVPLLQKLVAEVVGTYFLIFAGCAAVVVNLDNDKVVTHPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTKRFPVKQVPAYILSQVLGSTLASGTLRLIFNGKENHFSGTLPTGSDLQAFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHHEYRGIWIYLVSTTLGAIAGTWAYTFIRYTNKPVREISKSASFLKGVQNGGAK* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0546 273 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0546 273 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0546 273 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0546 273 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0546 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0546 273 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0546 273 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0546 273 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Mtr2g0546 273 Pfam Major intrinsic protein 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0546 273 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Mtr2g0546 273 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr2g0546 273 Gene3D Glycerol uptake facilitator protein. 3 260 IPR023271 -
Mtr2g0546 273 SUPERFAMILY Aquaporin-like 33 257 IPR023271 -
Mtr2g0546 273 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0546 Mtr-Chr2 5430723 5434172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0546 18 267 Major Intrinsic Protein MIP AT5G37820 59.684 1.80e-101 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0546 K09874 - gmx:100812577 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0546 2 5430723 5434172 Mtr2g0546 2 5430723 5434172 ECH