Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0537 ATGATGGAAGAAGCTCAGGGTAGTAGTTCCGATAAGGTGCCTCCTTTTCTCACTAAGACTTATAATATGGTTGAAGATCCTTCAACGGATGCCATTGTTTCTTGGGGTGCTACTGATAAAAGTTTTATTGTTTGGAATAAAGAAGATTTTGAAAAAGATTTGTTGTCTCGATACTTTAACCATAATAATTTCTCAAGTTTCATCAGACAGCTTAATACCTATGGCTTTAGAAAAATTGATACACAACTATGGGAATACGCAAACGATGATTTTGTAAGAAATCAAAAACATCTTATGAAGAATATCCAAAGGCGCAAAACAGTCTATAGCCATTCTTCGCAGAATGCTGATGGCCAAGGGGTTGCTGCTCCACTAGCAGAATCCGATCGACAGACATTGAATGCTTATGTTCAAAATCTTAAACACGACAGAGAACAAATGTTTCTGGAAATTCAGAGAAAGGAAGAGGTGAAGAAAATGAATGAGATAACATCACAGTACATGAAGGGTCATTTGGAAACTTTGGAAAAGAAACATCAAAGTGTGCTCTCTTCTGTTGGTCAAGTGCTGAAGAAACCTGGGAAAAAGGAGCAAAAAAGGAAGATTCCGAGAAACAATCCTTTTTGTTATGTAGCTAGCACTGAAGATCATGTGGGAACTTCTCATGTAATACACAAAGAAAACGACCCGGGTGTGTCTCGTCTATCATTAAACTTGGAACAATTGGATCTGCTCGACTCATCAATGACATTTTGGGAGGAGATTACAAATGATGTTGGTGCCGAAGTTCAGCCCAAGTCACTAGAAGTCGACATGAACTCCATGCCAGTGGTAGTTGTTCCTGATCCAGTTGCAACTGAGACAGATGTAGTTGTTATTCCTAATCACGTTGCAACTGAGCTGGATGTAATCGTTGTTCCTAATCCGGTTGCAACTGAGCCAGCGGTAATCAATGCTTCCGATCTTGTTGCAGTTGACCCAACTGTTGCAGTTGTCCCTGATTTTGTTGAACCAAAAGAACAACCCGTCGTAACATCCCTGGTTACTACTGATTATAATAATGAATTTTGGGGACAATACTTGCAGGACGAATCGGAAAATGAAGACATACCTAGTCGAGTTGGCCAATATTGGCAGACCAAAAGAGTCTAG 1152 0.3984 MMEEAQGSSSDKVPPFLTKTYNMVEDPSTDAIVSWGATDKSFIVWNKEDFEKDLLSRYFNHNNFSSFIRQLNTYGFRKIDTQLWEYANDDFVRNQKHLMKNIQRRKTVYSHSSQNADGQGVAAPLAESDRQTLNAYVQNLKHDREQMFLEIQRKEEVKKMNEITSQYMKGHLETLEKKHQSVLSSVGQVLKKPGKKEQKRKIPRNNPFCYVASTEDHVGTSHVIHKENDPGVSRLSLNLEQLDLLDSSMTFWEEITNDVGAEVQPKSLEVDMNSMPVVVVPDPVATETDVVVIPNHVATELDVIVVPNPVATEPAVINASDLVAVDPTVAVVPDFVEPKEQPVVTSLVTTDYNNEFWGQYLQDESENEDIPSRVGQYWQTKRV* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0537 383 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr2g0537 383 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr2g0537 383 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr2g0537 383 Gene3D - 8 107 IPR036388 -
Mtr2g0537 383 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 369 IPR027725 -
Mtr2g0537 383 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 369 - -
Mtr2g0537 383 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr2g0537 383 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Mtr2g0537 383 Coils Coil 137 157 - -
Mtr2g0537 383 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0537 Mtr-Chr2 5343279 5345577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0537 1 258 HSF AT4G18880 44.238 1.63e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr2g0537 HSF_DNA-bind 1.9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0537 K09419 - gmx:100820566 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0537 2 5343279 5345577 Mtr2g0537 2 5343279 5345577 ECH
Mtr8g2962 8 40253022 40255170 Mtr2g0537 2 5343279 5345577 PCT