Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0535 ATGGCTTCAGGGGCAATTTTCTCATCGCTGCGGCGGCGAAGATCACCAACGTTGGAAGCTTTTCTCGCTCCGGTTGATTTAAGTGACGTTGCTTTGGTTCAAACCCTTGTAACGGTTGTGAATGAGCTTGTGTGTTGTTTTTCAAAGCGTTCATTTTTCTTTCAGAGGAAAAATACACGTTCTTTAATTAGAAAAGTTGAGGTTTTTCAGGTTCTGTTGGAGTATTTGAATGATTCTGGTTCGGGTTCAGGTTCGGTTCTTCCGGCTACTGGGTTGCTTTGTCTGAAAGAGCTTTATTTGTTGCTGTATAGGTCAAAGATTCTGCTTGATTATTGCGCGCAATCGAGTAAGTTGTGGCTTTTGCTTCAAAATCATTCGATTTCGGGTCATTTTCATGATTTGAATCAAGAGATTTCGACACTTTTGGATGTTTTTCCTGTTAAGGATGTTTGTTTGAGTAAGGATGTTAGGGAACAGATTGAGCTTTTGTTGAAGCAATCAAGGAGGGCTAAGCTTTTTATTGATATGGAGGATGATGCTCTTAGGGTTCGTTTCTTTGAGTTTCTTGATCAGTTTGAGAATGGGAGGATTCCTGATTCGGAAGAATTGCGAAGTTTTTATGTTGATAAGTTGCAGATTATGGATGCTGCTTGTTGTAGAACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAACCATGAGGGTGATATTGAGCCTACAGTTTCTGTGCTTAAAGGGTTGGTGGCCATGACGCGGTATTGTAGGTTTTTGATATTTGGATTTGAGGAAGATGAGCTTGATATGGAAAATGGAAGTCAGAAGAAGATCAAGAAGGGTTTGATTACTCAAGAAATTGCTGATACATTTTTAACTGTTCCAAAAGACTTTTGTTGCCCGATATCATTGGATTTGATGAGAGATCCAGTGATTATTTCCACCGGTCAAACTTATGATAGGAGCTCCATTTCTAGGTGGATGGATGAAGGGCATACAACTTGCCCAAAGACAGGTCAAACGCTTGCTCACACTCGTCTTGTCCCGAATCGTGCCTTGAGGAATTTGATTGTGCAGTGGTGTAGTGCTCATGGAATTCCCCTTGAACCACCAGAGGTGATGGAAGCAATGGGTGAAGCTTTTGCATCTGCTTGTCCCACCAAAGCTGCTCTTGAAGCCAATAGAGCAACTGCAAATCTTCTCATTCAACAGCTGGCTAATGGATCACAATCTGGAAAGACTGTAGCTGCTAGGGAGATTCGATTGCTTGCGAAAACTGGCAGAGAAAATCGCGCTTTCCTTGCAGAAGCGGGGGCAATTCCTTATCTTAGGGACTTGCTTTCGTCGCCTAATTCTGTTGCTCAGGAGAACTCAGTTACTGCATTGCTCAATCTTTCCATATATGACAAGAACAAAAGCCGGATCATGGACGAGGCAAGTTGTCTTGTATCAATTGTTAATGTTTTGAGATTCGGGCATACAACAGAAGCAAGGGAAAATGCTGCTGCAACGTTGTTCAGCTTATCAGCAGTTCATGACTATAAGAAGATAATCGCGGACGAGACCGGAGCTGTTGAAGCCCTAGCAGGGCTGTTACAAGATGGGACTCCAAGAGGAAAGAAGGATGCAGTAACAGCTTTGTTCAATCTTTCCACACACACCGATAATTGTGTTAGAATGATTGAGGCAGGAGCAGTAACAGCTCTAGTTGAGGCTTTAGGGAATGAAGGAGTTGCCGAGGAAGCAGCGGGTGCCATAGCCTTGATTGTTCGACAGCCTTTCGGAGCCAAAGCATTAGTGAATCAGGAAGAGGCAGTAGCTGGATTGATAGGAATGATGCGTTGTGGAACACCGAGGGGTAAGGAGAATGCAGTCGCAGCATTGCTCGAGTTATGCCGGAGTGGAGGTTCAGCTGCAACTGAAAGGGTAGTTAAGGCACCAGCTATTGCCGGATTACTTCAAACCCTATTATTTACCGGGACAAAGCGAGCTAGACGTAAAGCCGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTGCATTACGGTGGATTAGGTGTAGGCTATGCATTTGCTAGCAATTCAGCTCAAACTAGAGATTCAAGCTTTGCTGCAGGGGATGTTTCAGTACCAATGTCAATCTCTGTACCTGTAATATAG 2163 0.4355 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVCCFSKRSFFFQRKNTRSLIRKVEVFQVLLEYLNDSGSGSGSVLPATGLLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVCLSKDVREQIELLLKQSRRAKLFIDMEDDALRVRFFEFLDQFENGRIPDSEELRSFYVDKLQIMDAACCRTEIEALEEQIVNHEGDIEPTVSVLKGLVAMTRYCRFLIFGFEEDELDMENGSQKKIKKGLITQEIADTFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVPNRALRNLIVQWCSAHGIPLEPPEVMEAMGEAFASACPTKAALEANRATANLLIQQLANGSQSGKTVAAREIRLLAKTGRENRAFLAEAGAIPYLRDLLSSPNSVAQENSVTALLNLSIYDKNKSRIMDEASCLVSIVNVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVEALGNEGVAEEAAGAIALIVRQPFGAKALVNQEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPAIAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAQTRDSSFAAGDVSVPMSISVPVI* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0535 720 PANTHER U BOX DOMAIN-CONTAINING 12 701 - -
Mtr2g0535 720 SMART Ubox_2 295 358 IPR003613 GO:0004842|GO:0016567
Mtr2g0535 720 Pfam Armadillo/beta-catenin-like repeat 426 464 IPR000225 GO:0005515
Mtr2g0535 720 ProSiteProfiles U-box domain profile. 291 365 IPR003613 GO:0004842|GO:0016567
Mtr2g0535 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 365 IPR013083 -
Mtr2g0535 720 Gene3D - 395 671 IPR011989 -
Mtr2g0535 720 SUPERFAMILY ARM repeat 395 673 IPR016024 -
Mtr2g0535 720 Coils Coil 216 236 - -
Mtr2g0535 720 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 436 478 IPR000225 GO:0005515
Mtr2g0535 720 CDD RING-Ubox_PUB 296 338 IPR045210 -
Mtr2g0535 720 SMART arm_5 510 550 IPR000225 GO:0005515
Mtr2g0535 720 SMART arm_5 551 589 IPR000225 GO:0005515
Mtr2g0535 720 SMART arm_5 425 465 IPR000225 GO:0005515
Mtr2g0535 720 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 701 - -
Mtr2g0535 720 Pfam U-box domain 292 362 IPR003613 GO:0004842|GO:0016567
Mtr2g0535 720 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
Mtr2g0535 720 SUPERFAMILY RING/U-box 280 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0535 Mtr-Chr2 5326878 5329594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0535 1 719 U-box Gene Family AT1G29340 69.304 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0535 - - mtr:MTR_2g018010 1332.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0535 2 5326878 5329594 Mtr2g0535 2 5326878 5329594 ECH