Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0525 ATGGTAGCACAAGCAACTGATAATGGAATCCGTAGCCGAAAGAAATCATCAAGAGGTCACCACAGGTTTGTAGGAGTTCGTCAAAGGCCGTCCGGAAGATGGGTAGCAGAGATCAAAGACTCACTACAGAAAGTTAGGCTTTGGCTTGGAACATTCGACTCAGCCGAAGAGGCAGCTCGTGCTTATGACACTGCTGCTAGAGCTTTGAGAGGTGCTAATGCAAGAACCAACTTTGAATTGCCAGAATCTGAAACAAATGGTAGTGGAGGTTCAAAGCGCGGTGCTGGTTCCAAATTCATGCTAGAGAATACAGAACCTTTTTCTTTTGAAGATGTCAGTGACTCGGGTTCAGGTTCAGAACACGGTCTTCTTGGTGCACTCAAGGCAAAACTTTTTGACGGAAAAGAAGGGAAATTTTCATTTTCATTTCCTTCTGGTAGCATGGTTACAAAATCAACTCAGAATTGTTCTGGAAAGAAAGACTCATCATTATCAGCTACTTATTGCCTATCACAGATGAATGAAGCTCATGCAAATCCTCTGCCTAGTTCTTTGAGTATTTCATCAAACACTTTTGCTAAGAGTGTGGCTATCCCAAATAATGATCATGAAATTTGTCAAACACCATCTATGACAAACATGTTATGGTCCAATGAAATGGAAAATGAATTTCCTTGGCCAATTCAGATGAGTCATGTTCATGAGAATCATGAAAATAGTACTAGTATGCTTGCATCTGGAAGTACATCAAATTTTGCATGGCCACTAATAGAGTCCAATATTGACATGACATGTATGGACCAAGGGATACTAAATAGTAACAGAAGTGATCAAATGAATATGATGAACATGCAGTTACCACCTCTAATTGGTGGAGCAAGTAGTGATGGGTTTTGGACATTGGATCAGCAGCAACAATTTGTGCAATGTGAGAATAATAATAGTTGGTTTGGTTCTGGTGGTGGATCTTGGGATCCTCTTCTCTATGTGCCATCTGAGCTAGGCTAG 1008 0.4077 MVAQATDNGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDSAEEAARAYDTAARALRGANARTNFELPESETNGSGGSKRGAGSKFMLENTEPFSFEDVSDSGSGSEHGLLGALKAKLFDGKEGKFSFSFPSGSMVTKSTQNCSGKKDSSLSATYCLSQMNEAHANPLPSSLSISSNTFAKSVAIPNNDHEICQTPSMTNMLWSNEMENEFPWPIQMSHVHENHENSTSMLASGSTSNFAWPLIESNIDMTCMDQGILNSNRSDQMNMMNMQLPPLIGGASSDGFWTLDQQQQFVQCENNNSWFGSGGGSWDPLLYVPSELG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0525 335 MobiDBLite consensus disorder prediction 76 97 - -
Mtr2g0525 335 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Mtr2g0525 335 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Mtr2g0525 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 4 330 - -
Mtr2g0525 335 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Mtr2g0525 335 MobiDBLite consensus disorder prediction 1 25 - -
Mtr2g0525 335 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Mtr2g0525 335 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 330 - -
Mtr2g0525 335 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Mtr2g0525 335 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Mtr2g0525 335 MobiDBLite consensus disorder prediction 78 92 - -
Mtr2g0525 335 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Mtr2g0525 335 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0525 Mtr-Chr2 5192826 5194450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0525 11 78 AP2-EREBP Transcription Factor Family AT5G19790 67.647 4.37e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr2g0525 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0525 - - mtr:MTR_2g016730 640.188