Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0500 ATGTCAGAAGAAGGACATGAGATTCATAACAATTATATTCAGAGTGAGGACCTGCAGCTGGTTGAGGAAAGTGATAATTCATCTGGTTCTTCTAAAAAATGGTCTTCCTTTGATTTGAATGAAGAAGCTACAAGTGAAGATAACAACCATGAAGCAACACTTGAGGAGAATGAGAATGAGAAGGAAAATATTGAAGGTAATAGTAGATCAAGAGAAGGAAATAATGAAAGAAGAGGCAAGGTTAGACATTATGTTAGATCCAAGATGCCTAGGTTAAGGTGGACTCCTGAGCTTCATCATTCTTTTTTGCATGCTGTTGAAAGACTTGGTGGTCTAGAAAGAGCAACACCCAAGTTGGTGCTTCAGTTAATGAGTGTGAGAGGACTCAATATTGGTCATGTCAAGTCTCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGTTCGGACAAGTACTATGCCAAACACAAAGGTCAACACAAGAAGTAGGTAGATCTCAGAAACTCGATCTAAGTCAACATTTCAAGATGGGTAATGGTGGTATTATTCTATCAAGTAGTTACAACGAGCAGCATCATAATCCTCAGTATTTCCCAACTCTCCTGAAGCCATGCCCTTCCTTCTCCTTATCACGTAATTATTCACATACAAACTCATCTCATCATGATGATTCAAGGCACCAACATTGGCACTTCAATCATCAACCTTTTAAATTTGCACCCGTGACACCAACCCAATTTCTTGAAGAGAAAAATTGGTCTCCATTTGAAATCATGAACAATATTCATCAACCGGAATTCAAAAGGCTACTTTCCAATGTAACTTCTAAAACTTGGTCAAAACCTATTGAGAAAGTTGAATGGAACAACACAAGTAGTAGTATTACAAATAATACAGAATATCTATTGAAGTCCAAAGAACCTTGCACCTCTTCCACAAGTTTATTGCTACAATTTGAGGCCCCATTTCGGATCAAGTTGAATCAAGAGAAAGTACATAAAGATGAGAAAAGATTATTGCCTGATTTGCAACTAGGTTTGAGTCACATATATGGAAACAATGATGGTAAGATTGATCATTGCAGAGAGACCAAGGAAATTAGCACAAAGTTATCACTTTCTTAG 1125 0.3742 MSEEGHEIHNNYIQSEDLQLVEESDNSSGSSKKWSSFDLNEEATSEDNNHEATLEENENEKENIEGNSRSREGNNERRGKVRHYVRSKMPRLRWTPELHHSFLHAVERLGGLERATPKLVLQLMSVRGLNIGHVKSHLQMYRSKKLDEFGQVLCQTQRSTQEVGRSQKLDLSQHFKMGNGGIILSSSYNEQHHNPQYFPTLLKPCPSFSLSRNYSHTNSSHHDDSRHQHWHFNHQPFKFAPVTPTQFLEEKNWSPFEIMNNIHQPEFKRLLSNVTSKTWSKPIEKVEWNNTSSSITNNTEYLLKSKEPCTSSTSLLLQFEAPFRIKLNQEKVHKDEKRLLPDLQLGLSHIYGNNDGKIDHCRETKEISTKLSLS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0500 374 MobiDBLite consensus disorder prediction 1 83 - -
Mtr2g0500 374 MobiDBLite consensus disorder prediction 12 38 - -
Mtr2g0500 374 Pfam Myb-like DNA-binding domain 92 142 IPR001005 -
Mtr2g0500 374 Coils Coil 40 67 - -
Mtr2g0500 374 Gene3D - 89 146 - -
Mtr2g0500 374 MobiDBLite consensus disorder prediction 39 80 - -
Mtr2g0500 374 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 234 - -
Mtr2g0500 374 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 238 374 - -
Mtr2g0500 374 SUPERFAMILY Homeodomain-like 88 144 IPR009057 -
Mtr2g0500 374 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 145 IPR006447 GO:0003677
Mtr2g0500 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 146 IPR017930 -
Mtr2g0500 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 234 IPR044848 GO:0003700
Mtr2g0500 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 238 374 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0500 Mtr-Chr2 4940249 4945028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0500 27 147 G2-like Transcription Factor Family AT2G42660 52.893 6.13e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr2g0500 Myb_DNA-binding 1.8e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0500 - - mtr:MTR_2g016220 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0500 2 4940249 4945028 Mtr2g0500 2 4940249 4945028 ECH
Mtr8g2931 8 39925563 39930715 Mtr2g0500 2 4940249 4945028 PCT