Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0499 ATGACTGGGAGGAAGGTTAAACTTGCATACATAGCCAATTCATCGAGCAGGAAGGCAAGCTACAAAAAAAGGAAAACTGGTTTGCTAAAGAAGGTTAATGAAATCAGCACTCTATGTGGGATAGAAGCATGCGCAATAATCTTTGGTGAAAACAATGCTCAACCAGAGGTTTGGCCACCAGGTCCTGCAACAAAAGATGTGTTATCCAAGTTCCTACACTTGCCTGAAATCGAACGAAGCAAAAATATGGTGGATTTGACAGCTTACTTGAACCAAAGTATTGCAAAATCTCAATTGCTGTTGAGGAAACAAATGGAGGCAAACAAGAAGAATGAATTCGCCCTATTTATTACTAAAGTATTTAGTACTAGACAATATCGTGTCGAGGATGTGAATGTGAATGAACTTAATGACCTGGCGGCCTTTATAAATGACAATCTGAAGGAAATTGATTGGAGGTTGCAATCGGCGGAAATTCAATCTCAAGAGGAAGCTGGAAATGGAGCTGAAGATATGAATGGAATAGGGAATGAGGGTAATAAGGGTGATGCATCTGGGCTGGTGAATGTAGGAGATATGCAAGCTAATATGGGCAATGGTGCTGAGGTCCAAGGTTTGGATAGCAACGTGAAATATGGCATGGAAAGTGATTATGAAGATCCACCTTGGGACTTCTCCATGTTAGCATTTCATGATGTTAATACGGACATAAATGGTCTTTGGTCTAACTAA 732 0.403 MTGRKVKLAYIANSSSRKASYKKRKTGLLKKVNEISTLCGIEACAIIFGENNAQPEVWPPGPATKDVLSKFLHLPEIERSKNMVDLTAYLNQSIAKSQLLLRKQMEANKKNEFALFITKVFSTRQYRVEDVNVNELNDLAAFINDNLKEIDWRLQSAEIQSQEEAGNGAEDMNGIGNEGNKGDASGLVNVGDMQANMGNGAEVQGLDSNVKYGMESDYEDPPWDFSMLAFHDVNTDINGLWSN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0499 243 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Mtr2g0499 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr2g0499 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr2g0499 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr2g0499 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr2g0499 243 PANTHER MADS BOX PROTEIN 2 164 - -
Mtr2g0499 243 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Mtr2g0499 243 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr2g0499 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr2g0499 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mtr2g0499 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0499 Mtr-Chr2 4938091 4939275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0499 1 155 Type I MADS-box Gene Family AT5G48670 44.586 3.08e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g0499 SRF-TF 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0499 - - mtr:MTR_2g016210 486.493