Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0483 ATGGATTCTAGCTCTGATATTTCGAGGATACTATTCAATGCCACTTCATATAGATTTGGTGCTTCAAATGAGACTTCAAGAGGTGGGTTTGTATCAACAAACTCATTGGTTTTGGATAGTGAGAAAGGAGAATTAGTGAAGTCCCCTCCAATAATTAATGGAGAGAAAAAGATTTGTGATGCTAACAAAACTTTAGTGGCTTTGAAGAATCATAGGGAAGCAGAGAGGAAGAGAAGAAACAGAATTAATGGTCATCTTGCTAAACTCCGTGCACTAGTGCCCTCCTCTCCAAAGATGGACAAAGCAACTTTACTAGCTGAGGTTATTAGGCAAGTGAAGCATTTGAAAAAAAATGCAGATGAAGCAAGCAAAGGTTATTCAATTCCAACAGACGATGATGAAGTGAAAGTTGAACCATATGAAAATGGTGGATCATTTCTTTACAAAGCATCTATCAGCTGCGATTATCGACCAGAACTTCTATCTGATCTAAGACAAACTCTTGATAAACTTCAACTACAATTGGCACTGAGTTCTGTACTGGAAAGGGCTTCTACCTCGATGGACTACTCGTTAAGAACACCACGTCCTTGCAAACAGATGCAGCAGACATCTACTATGTCATGCAACCATGAATTTTGCTCTTGTTGA 651 0.3886 MDSSSDISRILFNATSYRFGASNETSRGGFVSTNSLVLDSEKGELVKSPPIINGEKKICDANKTLVALKNHREAERKRRNRINGHLAKLRALVPSSPKMDKATLLAEVIRQVKHLKKNADEASKGYSIPTDDDEVKVEPYENGGSFLYKASISCDYRPELLSDLRQTLDKLQLQLALSSVLERASTSMDYSLRTPRPCKQMQQTSTMSCNHEFCSC* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0483 216 CDD bHLH_AtAIG1_like 63 139 - -
Mtr2g0483 216 SMART finulus 72 121 IPR011598 GO:0046983
Mtr2g0483 216 Gene3D - 66 125 IPR036638 GO:0046983
Mtr2g0483 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 115 IPR011598 GO:0046983
Mtr2g0483 216 PANTHER TRANSCRIPTION FACTOR BHLH30 8 175 IPR045847 GO:0003700|GO:0006355
Mtr2g0483 216 Pfam Helix-loop-helix DNA-binding domain 70 116 IPR011598 GO:0046983
Mtr2g0483 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 126 IPR036638 GO:0046983
Mtr2g0483 216 Coils Coil 105 125 - -
Mtr2g0483 216 PANTHER DNA BINDING PROTEIN-LIKE 8 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0483 Mtr-Chr2 4788341 4791078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0483 69 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 45.378 6.34e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g0483 HLH 3.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0483 - - mtr:MTR_2g015890 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0483 2 4788341 4791078 Mtr2g0483 2 4788341 4791078 ECH
Mtr2g0483 2 4788341 4791078 Mtr4g2874 4 42437356 42440835 ECH