Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0454 ATGGCTTTGCAACTGTTGAGAAATCGCACTTCAGCGTCAACGTTCAATTTGTTCACCAATGCTCTTAGACGTTTCTCTACTGCTGAGGTTTCGAACGGTATTCCTCAGGAGGCACGCGAGAGGATGATGTATTCCGACATAAACTCACAGATTGGGAGTTGTATGCCTCTCTCTTCAATGCGAATTGGAACAATCATTCACAACATTGAGCTGAACCCGGGGCAAGGTGGAAAGCTTGTTCGGGCAGCCGGTACCAATGCAAAGATCTTGAAAGAGCCCACATCAGCATACGTTTTAATCCAACTACCATCTGGTGTTAAAAAGCTGATTGATACTCGATGCAGGGCCACTGTTGGTACTGTCTCTAATCCAACTCACGGTGATCGCAAGCTTAGAAAGGCTGGTCATAGCAGATGGCTCAATCGGAGACCGGTTGTTCGGGGTGTGGCTATGAATCCTGTTGATCATCCTCATGGCGGAGGAGAAGGCAAGAGCAAGAGTAGTGGTGTGGGGAAAGGTTCCCGCACTCCTTGGGGTAAGCCAACCAAGGGTGGTTTCAAGACTGGACCTCTTAAGCGCAGAAAGTAG 588 0.4864 MALQLLRNRTSASTFNLFTNALRRFSTAEVSNGIPQEARERMMYSDINSQIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSAYVLIQLPSGVKKLIDTRCRATVGTVSNPTHGDRKLRKAGHSRWLNRRPVVRGVAMNPVDHPHGGGEGKSKSSGVGKGSRTPWGKPTKGGFKTGPLKRRK* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0454 195 Gene3D - 45 121 IPR014722 -
Mtr2g0454 195 SUPERFAMILY Translation proteins SH3-like domain 51 185 IPR008991 -
Mtr2g0454 195 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 43 195 - -
Mtr2g0454 195 Gene3D Ribosomal protein L2, domain 3 122 195 IPR014726 -
Mtr2g0454 195 MobiDBLite consensus disorder prediction 150 195 - -
Mtr2g0454 195 Pfam Ribosomal Proteins L2, C-terminal domain 50 179 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mtr2g0454 195 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Mtr2g0454 195 PANTHER RIBOSOMAL PROTEIN L2 43 195 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mtr2g0454 195 SMART Ribosomal_L2_C_2 49 181 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0454 Mtr-Chr2 4554500 4556422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0454 48 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.333 1.39e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0454 - - gmx:100792418 292.737