Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0440 ATGGCTTCATCAAATAGACACTGGCCAAGCATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAACTCTTCTCTCATCTCTTCTGCTTGCCACAGAACCCCTTACTCCTCAGGTTGTGAAGAGAGAAGTCCTGAGCCAAAGCCAAGGTGGAATCCAAAACCAGAACAAATCCGCATACTTGAAGCTATCTTCAATTCTGGAATGGTGAATCCACCAAGAGAAGAAATAAGGAAGATTAGGGCACAGTTGCAAGAGTATGGTCAAGTTGGTGATGCTAATGTTTTCTATTGGTTCCAAAACCGCAAATCAAGAAGCAAGCATAAGCTTCGCCATCTCCAAAACCAGAACAAGAATCAGAACCAGAACCAGAATCAGAATCAAGATCAACCACCACAACAAAACCCTAATTCACTTTCTCAAATTTCTGCTACTGTACCCTCATCTTCTTCATCTTCCTCTGAGAAATCTCCACCAAAAGAATTAATACCTGCCAAAGTATTTTCCCTTGGTTTCCCTAACATCAATGATGTTGTGCCTAATTCTCCAACTGCTTCTGTGAATCAAAACCAAACATATTTTCAGACTCAAAATGTTACTACCCTTCTTCCACCACCACAAGTAACTGCACCAACTACTGAGACTTTCTTCTTCCCGGTGCAACATCATGGACAAGGAATAGTGCTTCCTAATAATGTTACATCACAAGGGTTTTGCTTCTCTGAACTTTCCAACATGGTTCCTGCTCAATCACATGGTCAGCAACACCATAACACTGGTAATTGCACTACCAGTTTCCTGCTTAGTGAGATCATGAACAACCATGGTGTTAATTCCTCAAAGAAAGATCAAGAACAGGATAAGTCTGTGAAAATAATGCACCAAATCCCCCCACATCTGAACATCTGTTTGCCACCCGCCACAACTACTACTACTGTTTTACATCCTACTACTTCCTCCACCATCACTGTTCCATCCCCTATCATTTCTCAAGTGCAAGGCATTGGTGAACCAGGTGTTGCTGCAAAATCAGTGGTGTTTATCAATGATGTGGCCTTTGAGGTTGCATCTGGACCTTTTAATGTTCGTGCGGCATTTGGTGATGATGCTGTTCTTGTACATCAAACTGGTCAGCCTGTGTTAACAAACCAGTATGGTGTCACTCTTCATTCACTCCAGCATGGTGCATTATATTATTTGATGTAG 1221 0.421 MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSACHRTPYSSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNKNQNQNQNQNQDQPPQQNPNSLSQISATVPSSSSSSSEKSPPKELIPAKVFSLGFPNINDVVPNSPTASVNQNQTYFQTQNVTTLLPPPQVTAPTTETFFFPVQHHGQGIVLPNNVTSQGFCFSELSNMVPAQSHGQQHHNTGNCTTSFLLSEIMNNHGVNSSKKDQEQDKSVKIMHQIPPHLNICLPPATTTTTVLHPTTSSTITVPSPIISQVQGIGEPGVAAKSVVFINDVAFEVASGPFNVRAAFGDDAVLVHQTGQPVLTNQYGVTLHSLQHGALYYLM* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0440 406 Gene3D - 53 120 - -
Mtr2g0440 406 SUPERFAMILY Homeodomain-like 49 117 IPR009057 -
Mtr2g0440 406 MobiDBLite consensus disorder prediction 38 60 - -
Mtr2g0440 406 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Mtr2g0440 406 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Mtr2g0440 406 MobiDBLite consensus disorder prediction 123 163 - -
Mtr2g0440 406 SMART HOX_1 51 118 IPR001356 GO:0003677
Mtr2g0440 406 Coils Coil 108 135 - -
Mtr2g0440 406 CDD homeodomain 52 114 IPR001356 GO:0003677
Mtr2g0440 406 MobiDBLite consensus disorder prediction 123 165 - -
Mtr2g0440 406 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 406 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0440 Mtr-Chr2 4409061 4414407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0440 1 124 Wox Gene Family AT2G33880 85.714 2.55e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Mtr2g0440 Homeodomain 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0440 - - mtr:MTR_2g015000 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0440 2 4409061 4414407 Mtr2g0440 2 4409061 4414407 ECH