Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0426 ATGGGGTTAATCGATCTCAACACTACAGAGGATGATGAAACACCATATTCAGCTATTTCTTCTTCATCTTCTTCTTCTCACTCTGGTATAAGCACTTCTGCTTCAGCAGCTATGGTTGTTCCTCCACCTCTTCCTCCTCAAGGTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTTTGATCTCTTTACCAAAGAAAGGAAGCATTGTTGTTTATGTTCCACAAGGACACTTTGAACAAGCTCATGATTTTCCTGTTTCTGCTTGTAATATTCCACCTCATGTTTTCTGTCGTGTTCTTGATGTTAAGCTTCATGCTGAGGAAGGGAGTGATGAAGTGTATTGCCAAGTCTTGTTGGTTCCTGAAAATCAGCAACTGGAGCAAAATGTTCGTGAAGGGGTAATTGATGCTGATGCAGAAGAGGAGGATACTGAAGCTATTGTGAAGTCAACAACACCCCATATGTTCTGCAAGACTCTCACAGCTTCTGACACTAGCACTCATGGAGGATTCTCAGTGCCTCGTCGAGCTGCTGAAGACTGCTTTCCTCCCCTGGATTACGGCCAGCAGAGACCTTCACAAGAGCTTGTAGCGAAGGATCTGCATGGCTCAGAGTGGAGGTTCCGACATATATACAGGGGGCAGCCAAGGAGGCATTTGCTCACAACTGGGTGGAGTGCATTTGTTAATAAGAAGAAGCTTGTGTCCGGTGATGCTGTGTTGTTTCTTAGGGGCGAGGATGGAGAACTGAGACTAGGGATTCGAAGGGCGGTGCAGTTGAAAAGTTCTGGTTCCTTTGGAGGTCTCTCTGGTATGCAACTGGATCCTGGCTCTCTCATGGATGTTGTGAATGCTTTATCCAAAAGATCTGCTTTTAGTGTTTGCTATAATCCAAGGGTCAGTTCTTCAGAATTCATCATACCTGTCAACAAGTTCTTGAAGAGCCTTGATTGTTCTTATTCCGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGGTTCACTGGATTAATTGCTGGAATAAGTGATGCGGATCCTGTTAGATGGCCAGGATCAAAATGGAAATGCCTATTGGTAAGGTGGGATGACATAGAAGCATCGAGGCATAATAATAGGGTTTCCCCATGGGAAATCGAGCCATCTGGTTCTGCTTCCAATTCCAGCAACCTGATGGCAGCTAGTTTGAAGAGGACCAGGATTGGATTCACTTCAGCAAAGCTAGAATTTCCAGTTCCCAATGGGATTGGAGCGTCAGACTTTGGGGAATCATTAAGATTCCGAAAGGTCTTGCAAGGTCAAGAAATTATGGGCATGAATACTCCCTATGACAGTATTAATGCTCAGAGTCCCCGGTTATATGAGCTAGGGAGGTGCTATCCTGGTTCAAACTGTTCCGGGATTGCTGCAACAGGAAATATCAGAATGCACCCAGCGGCTTCTGATTTTCCCTCTAATGGCATAGGCTTTGGTGAATCTTTCAGATTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCTGTGCCCACCCTACGGACGAGCCTCGTTTGACGAGGCCCGTGGAAGTGGTTGCATTGGACGTTATGATGGTTATCCAATGCTCGGCTCCAGAAATGGATGGCCTGCACAGATGCACGACGCTGCTACACATTTGCATGCATCTGTTACATCTGGACAAGTTTCGTCTCCGTCGTCTGTGTTAATGTTCCAGCAGGCTGTTAATCCAGTTTCAAACTCTCGTTATGATAATATTAATCTCAACCAGGGTTCATACATATCTGAAGCTAAAAGTGGAATGTTTGCGCCTTCCCTATCTGACAAGCCTATTTTATCTAGTGGACTAGCTCTGGAAGGCACAACTTCTTTTGGTGTGCATGATTTTCATAATAATAATAATTTGTTGGATGGTTCAAGGTCTCGTGATTCAGTGTTAGCGATGAGAGACAATCAAGATATGGTTTCTTGTAAAACTGGCTGCAGACTCTTTGGGTTTTCATTAACCGATGACACACACATTGGCGGCGGTTGA 2049 0.449 MGLIDLNTTEDDETPYSAISSSSSSSHSGISTSASAAMVVPPPLPPQGSVCLELWHACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSACNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQLEQNVREGVIDADAEEEDTEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYGQQRPSQELVAKDLHGSEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAVQLKSSGSFGGLSGMQLDPGSLMDVVNALSKRSAFSVCYNPRVSSSEFIIPVNKFLKSLDCSYSAGMRFRMRFETEDAAERRFTGLIAGISDADPVRWPGSKWKCLLVRWDDIEASRHNNRVSPWEIEPSGSASNSSNLMAASLKRTRIGFTSAKLEFPVPNGIGASDFGESLRFRKVLQGQEIMGMNTPYDSINAQSPRLYELGRCYPGSNCSGIAATGNIRMHPAASDFPSNGIGFGESFRFQKVLQGQEILLCPPYGRASFDEARGSGCIGRYDGYPMLGSRNGWPAQMHDAATHLHASVTSGQVSSPSSVLMFQQAVNPVSNSRYDNINLNQGSYISEAKSGMFAPSLSDKPILSSGLALEGTTSFGVHDFHNNNNLLDGSRSRDSVLAMRDNQDMVSCKTGCRLFGFSLTDDTHIGGG* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0426 682 SUPERFAMILY DNA-binding pseudobarrel domain 151 265 IPR015300 -
Mtr2g0426 682 SMART B3_2 158 260 IPR003340 GO:0003677
Mtr2g0426 682 MobiDBLite consensus disorder prediction 10 27 - -
Mtr2g0426 682 Pfam Auxin response factor 285 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr2g0426 682 Gene3D - 156 260 IPR015300 -
Mtr2g0426 682 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Mtr2g0426 682 MobiDBLite consensus disorder prediction 1 27 - -
Mtr2g0426 682 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Mtr2g0426 682 PANTHER AUXIN RESPONSE FACTOR 40 679 - -
Mtr2g0426 682 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr2g0426 682 Gene3D - 321 396 - -
Mtr2g0426 682 CDD B3_DNA 156 258 IPR003340 GO:0003677
Mtr2g0426 682 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0426 Mtr-Chr2 4289206 4293715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0426 157 558 B3 DNA Binding Superfamily AT2G33860 54.950 7.72e-144 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr2g0426 B3 1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0426 K14486 - gmx:100789906 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0426 2 4289206 4293715 Mtr2g0426 2 4289206 4293715 ECH