Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0404 ATGGCGCCGAAAGTAGTTAAGAACGGTGGCGTTAACGGCGTTAAGGAGGCGCATTTTAGAGGAGTAAGAAAGAGACCATGGGGAAGATACGCCGCGGAGATAAGAGATCCAGGAAAGAAGAGCCGCGTTTGGCTCGGAACTTTCGACACGGCGGAGGAAGCAGCAAGAGCTTACGACTCCGCCGCACGTCAATTCCGAGGTCCAAAGGCGAAAACAAACTTCCCTTTCCCTATAGAAAATATTAAGATCCATAGCCCTAGCCAAAGCAGCACCGTTGAATCCTCAAGCCGTGACCGTGACGCCGCCGCTGATTCTTCACCGCTTGATCTCAACTTAGCTCCTGCTTTCCAGCACCGGTTCACTCCGATGCCGGCGGTTAACCAGACGTTTTGTTTTGATCCTGTGTTACGTGCCGGCATGGTGAATTCACGTTCTTGTTACGGTTATGGATTTGAATATAATCCTTCTATGGAGGCGAGTGGATTCCACGCGACGGTTGGTGCACAGAGTGATTCAGATTCTTCCTCGGTGATTGATCTGAACCACCATGGTAGAAGCTTCGATTTTGATCTTAACTACCCTCCTTTGGAAGATATGCTATGA 603 0.4975 MAPKVVKNGGVNGVKEAHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDSAARQFRGPKAKTNFPFPIENIKIHSPSQSSTVESSSRDRDAAADSSPLDLNLAPAFQHRFTPMPAVNQTFCFDPVLRAGMVNSRSCYGYGFEYNPSMEASGFHATVGAQSDSDSSSVIDLNHHGRSFDFDLNYPPLEDML* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0404 200 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Mtr2g0404 200 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Mtr2g0404 200 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Mtr2g0404 200 MobiDBLite consensus disorder prediction 78 105 - -
Mtr2g0404 200 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Mtr2g0404 200 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Mtr2g0404 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 122 185 - -
Mtr2g0404 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 115 - -
Mtr2g0404 200 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Mtr2g0404 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 6 115 - -
Mtr2g0404 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 122 185 - -
Mtr2g0404 200 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Mtr2g0404 200 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Mtr2g0404 200 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0404 Mtr-Chr2 4086213 4087258 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0404 15 84 AP2-EREBP Transcription Factor Family AT5G44210 82.857 3.93e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr2g0404 AP2 3.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0404 K09286 - gmx:100170742 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0404 2 4086213 4087258 Mtr2g0404 2 4086213 4087258 ECH
Mtr2g2601 2 38974407 38975503 Mtr2g0404 2 4086213 4087258 ECH
Mtr4g2478 4 38368290 38369293 Mtr2g0404 2 4086213 4087258 ECH